Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq743 360 1e-94 seq1450 286 2e-72 seq738 221 9e-53 seq4819 161 7e-35 seq916 125 5e-24 >seq743 Length=10780527 Score = 360 bits (398), Expect = 1e-94 Identities = 431/581 (74%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||| |||||||||||||||||||||||||| | ||| Sbjct 3845405 AAAACACTTTCACATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTT 3845346 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 | || || |||| ||| |||||| |||||||||| | |||||| ||||| || | | Sbjct 3845345 TTCTCCTGGACATCAGAGGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCCAAA 3845286 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCA--CAA-AC 4131 ||| |||| ||||||| || ||| ||||| || ||||||||||| ||| || | Sbjct 3845285 TCAGTTTCTAGAAAAAATATGCCACTCTCAAATTCCTGCATGATCCTTGTCCTGCAGGAT 3845226 Query 4132 AGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATC 4191 | | |||||| | ||| | ||| ||||| ||| ||| || |||||||| | |||| Sbjct 3845225 AATCTAAGATGACCTGGCTTGTCCATGGCTTCCTTAAACAGAG--CTACCTCCCACTATC 3845168 Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251 || ||||| ||| ||| ||||| ||||||||| || || |||||||||| |||||||| Sbjct 3845167 CAAACCATATCTGCTTAATTTGTTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCC 3845108 Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACA 4311 | ||| || | ||||||||||||| |||||||| ||| | ||||| | || ||||| Sbjct 3845107 AGACTTTTGTCAAAAAAATGAGCTCC-TGTGGAAGTTCCCTGAGTTCTCTACTTAGAACT 3845049 Query 4312 ACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTA 4371 | | |||||||| | |||||||| | || |||||| || | |||||||| |||||| || Sbjct 3845048 AAACTAATTCTGTCCTTTAAAGGTCAGTCCTTCTCTTGAGTGGAGAACCAGGTCTTTCTA 3844989 Query 4372 CCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAA 4431 ||||||||||| ||| ||| ||| || | | |||| | || |||||||||||||| Sbjct 3844988 CCCATAATCACCAAACGCTGCTTACCTTCTGCTAAAGAGGCTGTGGTCATTCTTTGGAAG 3844929 Query 4432 TGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATG 4491 | || || |||||| | | ||||| |||| || || | ||||| || ||||| Sbjct 3844928 TACTTGAATTCATTCCTGACCGGGGGCCAGGGCAGGTCCCCATTCTTGCCCATATCCATG 3844869 Query 4492 TTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || | ||||| | ||||||| || | ||||||| Sbjct 3844868 TTCTGGGACACAGCGATGATGCAGTCGAGCGGACGAACCAT 3844828 >seq1450 Length=2474494 Score = 286 bits (316), Expect = 2e-72 Identities = 287/368 (78%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 4155 CATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGC 4214 ||| ||||| ||||| |||||||| |||||| | |||| || ||||| ||||||| || Sbjct 2026548 CATGGCTTCCTTATAAACAGAACTGCCTCCACTG-TCCAAACTATGTCCACTTTATCTGT 2026490 Query 4215 TAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGC 4274 ||||||| | || | |||||||||||| |||||||| | ||| | || | ||||||||| Sbjct 2026489 TAATTCTAGTTGCTAGGTAAGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGC 2026430 Query 4275 TCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG-CCTTTTAAAG 4333 || |||||| | ||||| | ||| | |||||||| | |||||||||| |||||||||| Sbjct 2026429 TCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAG 2026370 Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393 | || |||||||| ||||| |||||||| |||||| |||| |||||||| |||||||||| Sbjct 2026369 GTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTT 2026310 Query 4394 TATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTC 4453 || || ||| ||||| | || |||||||||| ||||| ||||| |||||| | ||| Sbjct 2026309 TACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCCTGAGTG 2026250 Query 4454 TTGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCCATGTTTTGAGCTACAGCAACAAT 4511 |||| ||| || || ||| ||||| || |||||||| || | | | ||| | Sbjct 2026249 GGTGCCAGTGCAGGT--CCCTGTTCTTGCCGATACCCATGTTCTGGGACATGGTGACAGT 2026192 Query 4512 GCAGTTTA 4519 |||||||| Sbjct 2026191 GCAGTTTA 2026184 >seq738 Length=1970462 Score = 221 bits (244), Expect = 9e-53 Identities = 496/739 (67%), Gaps = 7/739 (1%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGT 101591 |||||||||||| | ||||||||| | || || || || ||| ||| ||| | || || Sbjct 1173289 TTAAACAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGCCTTC-AATCTGAAAGT 1173231 Query 101592 CATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651 | || || || ||| ||||| | ||| |||| | | | | || | || || | Sbjct 1173230 CTTCAGCCTTGAAGCCATCAGTTTTCTCAACTTTTCGAAGCATTTTGAGCTTCGGGAAAG 1173171 Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711 | || || ||||| | ||||||||| || | ||| |||||| | || ||||| | Sbjct 1173170 GCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTG 1173111 Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771 ||||||| | ||| || | || || || ||| || |||| || ||||||||| Sbjct 1173110 CATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGT 1173051 Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 | || | ||||| ||||| || ||||| || ||||| || | ||||| || |||| | Sbjct 1173050 AGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACC 1172991 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGA 101890 | |||||| || ||||| |||| || | ||| || || || || | | |||| Sbjct 1172990 GCTCATACAGCTGGCAGGACAGCTCACCGTTCACC-ACGTAGAACTGGCAAAGGGCATGG 1172932 Query 101891 CAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTT 101950 || || || | || | || | || | |||||| |||||||| | || ||| Sbjct 1172931 CAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGATGATTCTT 1172872 Query 101951 CTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCT 102010 || || ||||||| ||||| || || ||| ||| || | | |||||| ||||||| Sbjct 1172871 CTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTG 1172812 Query 102011 CCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070 ||| |||||| | | ||| ||||| || || ||||||||||||||||| | Sbjct 1172811 CCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGG 1172752 Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130 || || || || ||||||||||| |||| | || || || | || || | | Sbjct 1172751 TATACTGGGCCTAGATCTCCTTC---TCTGGTGGAGAATCCCAGGCTGTCCAAGACGCCT 1172695 Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190 | || ||||| || ||||| || | ||| || | || ||||| || || || Sbjct 1172694 CGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTG 1172635 Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250 ||||| |||||||||||| || ||| || | |||||| |||| || || | || || Sbjct 1172634 GATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTT 1172575 Query 102251 GTTAAAAGTGGAAATTCAT 102269 || | ||||||||||||| Sbjct 1172574 GTGAGCAGTGGAAATTCAT 1172556 >seq4819 Length=2582844 Score = 161 bits (178), Expect = 7e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| ||| Sbjct 682693 AGCTCTTAAGCCACATGGCGTACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 682752 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | ||| || | |||| || || ||| Sbjct 682753 ATCTTCTCCAGCCGGAAGGAGTGTGGGCAGTGCTGAGGCTCCCGTCGCAGGACCAGGATC 682812 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| ||||||||||||| ||| || ||||| | ||| || ||||| Sbjct 682813 TCTTGCTGGATGGGGACGGAGTTCATGTGGTGGTCGACCTTCCCCTTAGCGTTGACACAG 682872 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || ||| || ||||| || ||||| ||||||||||| || | || | || || ||| Sbjct 682873 CCCGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCGCTCGGGGTCCTCGTTG 682932 Query 27171 CG 27172 || Sbjct 682933 CG 682934 >seq916 Length=3817935 Score = 125 bits (138), Expect = 5e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||||||| ||||||||| Sbjct 3320647 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 3320706 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || || |||||||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 3320707 TGCTCAATAAGTTTTAAGGCATCATCCAGACTGTTGGCAAGAAAATGAGCTCCTTGTGG 3320765 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 3325777 CTTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 3325836 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| ||||| |||||| || Sbjct 3325837 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGTTTACCT 3325885 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||||||||| |||||| ||||| || ||||| Sbjct 3318388 AAGTTTATATTTTTCCAAATCAATTTCTGGAAAAAACATGTCACTCTCAAACTCCTGCAT 3318447 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| | | |||||| || ||| | ||||||||| || | | ||| Sbjct 3318448 GATCCTTGTCACAAATAATCTAAGATGGCCTGGCTTGTCCATAGCTTCCTTTGAAATAGA 3318507 Query 4176 AC 4177 || Sbjct 3318508 AC 3318509 Score = 95.1 bits (104), Expect = 9e-15 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| ||| || ||||| ||||| |||||||||||||||||||||||||| | |||| Sbjct 3310764 AAAAAACACTT---TTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 3310820 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| |||| |||||| ||||||| Sbjct 3310821 TCCTCCTGGACATCAGAAGGAACACCTGGATAT 3310853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361192493744834