Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq145 260 2e-64 seq753 232 8e-56 seq846 170 2e-37 seq992 140 4e-28 seq854 125 9e-24 seq324 82.4 9e-11 >seq145 Length=2339120 Score = 260 bits (288), Expect = 2e-64 Identities = 260/337 (77%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 1673329 AGCAGGGCTTCGATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 1673270 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 1673269 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 1673210 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || ||||||||||||| |||| || ||||||| ||| ||| | | |||||| || Sbjct 1673209 CATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTCGTCACTG 1673150 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || || |||||||||||||| || ||| ||| ||||| || Sbjct 1673149 GGAGTGGGCAGGGCCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTTTGAGCCGTTCACG 1673090 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || || ||||| |||||||| ||||| |||||||| || || || ||||| | ||| Sbjct 1673089 TCACATTTCTCAAAGAGCATGAAGTTGGGCTCGAACCCACCTCCTGGTCGGACATACTTG 1673030 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||| | || |||||| | |||| ||||| |||| Sbjct 1673029 AGGCAGTTCAGGATCTCCTCGTTCTTCGCGTTCTCCT 1672993 >seq753 Length=1049512 Score = 232 bits (256), Expect = 8e-56 Identities = 378/540 (70%), Gaps = 22/540 (4%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| |||||| ||||||| Sbjct 824849 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCAGAAAGCGGCGGCTGTGCCTGCGC 824908 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| |||| || ||||||||| || Sbjct 824909 ACAGGCACACCATCCGGGCCCACCAGGAACGTC---------------ACGTCGTTGTGG 824953 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || || |||| ||| || | | |||||| || Sbjct 824954 CACACTGGAGACCAGGTGATGAACTTGGTGTCGGTCATGAAGGCAGTGGCGTCGTCACTG 825013 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| | || ||||| || || |||||||||||| | || | ||| | | ||| || Sbjct 825014 GGCG--TGAAGAGCCTCGCGAAGAAAGGCGAAGAGCAGGTGCG-CCTCGTGCTGTTCACA 825070 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||| | ||||| |||||||| ||| | |||||||| | | || || |||| || ||| Sbjct 825071 TCGTATTTCTCAAAGAGCATGAAGCTGGGCTCGAACCTGCCGCCTGGTCGGATGTACTTG 825130 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | | || ||| | |||| |||||| ||| | || || |||||| | | | || Sbjct 825131 AGGCAGTTTAGGACCTCCTCGTTCTAGGCGTTCTCCCGCTGCCCAAACTGGCTGCCCCGG 825190 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || | | |||| | || || | |||||| ||||||||| | ||||| ||| Sbjct 825191 AAGCCGA-ATCGGCCAGACACC-AGGCCGGAGGCGCTGCTGCAGCTGATCTATCTGGGTG 825248 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 | ||||||||| | || ||||| ||||| || ||||| ||||| || || |||| Sbjct 825249 CAGCCCCGGACCGCTGTGCCCCAGAGCGACGCCACATTCTCAGTGAGC-AGCACCTGCCC 825307 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| |||||| || || || |||| | |||||| || ||||||||| || Sbjct 825308 CGCAGGGAGCCCCGGCTCAC-GGCTCCCCGCCGGCCAGCGGGCGCGCCGAGAAGGCGGAC 825366 >seq846 Length=557068 Score = 170 bits (188), Expect = 2e-37 Identities = 368/542 (68%), Gaps = 19/542 (4%) Strand=Plus/Plus Query 83063 GCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGC 83122 || || | ||| |||| | | ||| |||| | ||| |||||||||||||| |||| Sbjct 526396 GCTTCCAGGTCAGGCTTAAGGTCCATGGTCAGAAAGCTTCAGCTGTACCTGCGCATGGGC 526455 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 |||||| || || |||||||||||||||||| || ||||| |||||| Sbjct 526456 ACGCCGTCCAGGCCTCCCGGGAACTTCTCGAAGTTCCAAGCGACGTCCTTGCGG------ 526509 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC 83242 | |||||| | || || ||| ||| ||| ||| || | | | || || |||| Sbjct 526510 --ATACCAGGAGACGAACTTGGGCTCGGTCATGAGGGTAGTGGCGACATCACTGGGCGTG 526567 Query 83243 GGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCAC 83302 |||| ||||| || ||||||| |||||| || || ||| | | || || || |||||| Sbjct 526568 AGCAGAGCCTCGCGAAGGAAGGTGAAGAGTGGGTGCGCCTTGGTGCCATTCACGTCGCAC 526627 Query 83303 TTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAA 83362 ||||| |||||| | ||||| ||| |||| | | || | ||||| ||| | | Sbjct 526628 TTCTCAAAGAGCTTGAAGTTGGGCACGAACCTGCCATCA-GTGGGACGGACTTGAAGCCC 526686 Query 83363 GGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCA 83422 | |||||| |||| |||||| ||||| || | |||||||| ||| ||| || Sbjct 526687 TTCGGGATCTCCTTGTTCTTGGCGTTCTCCTGATGCACAAACTGGTTGCACCAGAAGCCG 526746 Query 83423 AGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCC 83482 |||| | ||| ||| || || || |||||||||||||| | ||| ||||| | | Sbjct 526747 AGCATGAACAGGGCCC-AG-GCCGAGTCGCCGCTGCAGCTCAT---TCTAGGTGTAGT-C 526800 Query 83483 CGGACCGTGCTACCTCAGAG-GGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 |||||||| | |||| | | || || | |||||| ||| || || | ||| | Sbjct 526801 CGGACCGTTGTGCCTCGGCGACGAGGCCAGGTTCTCTATGGGCGGCCCCTTTCACCGCAG 526860 Query 83542 GAAGCCTAAGCTCACAGGTTCTCCT--CCGGTAATCGGGCGTGCTGAGAAGGCGTACACA 83599 |||||| | |||| | || | || || | || || || |||||||||||||| Sbjct 526861 GAAGCCCAGGCTC-CTGGGCCCGCTGGCCAGCGCGCGCACGCGCACAGAAGGCGTACACA 526919 Query 83600 GA 83601 || Sbjct 526920 GA 526921 >seq992 Length=5372458 Score = 140 bits (154), Expect = 4e-28 Identities = 210/288 (73%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 4596395 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCACGCCTGC 4596453 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 4596454 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAATACAACTGCA 4596513 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 4596514 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 4596572 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| ||||| |||| ||| ||||| ||||| |||| ||| ||||| ||| Sbjct 4596573 GTGCAGCTGCTGTACCCCCGGGCCAAAAACGACCGCGTCTGGA-CACTCGAGTTCGTGGG 4596631 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 4596632 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 4596677 >seq854 Length=2366467 Score = 125 bits (138), Expect = 9e-24 Identities = 179/249 (72%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 83051 GGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTAC 83110 |||| |||||||| || ||||| |||||| | ||| |||| | ||| |||||||||| Sbjct 1831523 GGGGACAGCAGGGCATCAATGTCCAGCTCCATGTCCATGGTCAGAAAGCAGTGGCTGTAC 1831582 Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170 ||| |||| ||| | ||| | |||||| ||||||||| ||||||||||||| || Sbjct 1831583 CTGTGCACAGGCACACTGTCCGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCCATATCA 1831642 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG--TGCTCATGT 83228 ||| ||||| ||||||| | | || || | ||| | ||| ||||| | || | Sbjct 1831643 CTGCAGCACAGCAGAGACCAAGTGAAGAACTTGTGGTAG-TCAAGAGCGCAGGGGCA--T 1831699 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 ||| || ||||| ||||| |||| | | |||| || |||||| |||||| ||| Sbjct 1831700 TGTCCCTCGGCGCTGGCAGAGCCTGGGGAAAGAAGAGGACGAGCGGGTGTGCCTGTGCCT 1831759 Query 83289 CGTTGACCT 83297 | || |||| Sbjct 1831760 CATTCACCT 1831768 >seq324 Length=1422110 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || || ||||| || ||||| ||||| || ||||| | || || | || Sbjct 378681 CCTGATGTCCAAATTGGTTGCAAGGGAAGCCAAGAACCACCAGGCGCCTAGGA---AAGC 378625 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | ||||||||||| | ||| ||||| |||||| || | |||||||| || || | Sbjct 378624 GGCATTGCAGCTCGTTGAGCTGGGTGTAGTCCCGGGTGGTTGTGCCTCAGAGTGAGGCCA 378565 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| |||| ||| ||| || || Sbjct 378564 CATTCTCGATCAGCACTGCCCTGCCTCGGAA 378534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608695328793360