Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq598 1903 0.0 seq1143 95.1 8e-15 >seq598 Length=2579464 Score = 1903 bits (2110), Expect = 0.0 Identities = 1453/1723 (84%), Gaps = 49/1723 (3%) Strand=Plus/Plus Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130 ||||||| |||| ||||||| || |||| ||| || |||||| | ||| ||||| Sbjct 699774 GTCCTAATCCCAGCCCCAGCACGATCAGCT---TTGTAGGGTCAGGTGAGAGAACTCCAT 699830 Query 107131 CCACA-------------AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGA 107177 | || ||| || ||||| | || ||||||||||| ||||||| ||| Sbjct 699831 CAGCAGGCTGGGTGTATGAGGATCCTAGGCGGATCTGGACTGAGGATACTTGTCTAGAGA 699890 Query 107178 AGACATCTATCTTTACCATCACTCTGGAGTTGAACTTGATGTTCT-------------GG 107224 ||| |||| ||| |||||||| |||||||||||||||||||| || Sbjct 699891 AGAAATCTGGTTTTGCCATCACTGTGGAGTTGAACTTGATGTTCCTTGAGCCCATTCAGG 699950 Query 107225 ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTG 107284 |||||||||||||| |||||||||||||||||| |||||| || |||||| |||| |||| Sbjct 699951 ATTAGTTTGTAATTGAAGGCATTTTGTTCTGTCTAAGGATTTCATCCTCCTCCTTCCCTG 700010 Query 107285 TGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTG 107344 ||| |||||||| | ||||||||| ||| ||||||| || ||||||||||||| | || Sbjct 700011 TGCACAAACTCTGCCAATCTCCCATTCCACGAAGATGACTTGGTGGAAGAAGAAATTCTG 700070 Query 107345 CCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAG 107404 |||| | |||||||||||||| ||||||||||||||||||||||| ||||| || |||| Sbjct 700071 CCGGAGGCATCATCTGTGGGCTTTGGGCTGCTATATGCTGCTGGCCCTTGTTGCTTTGAG 700130 Query 107405 ACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCA 107464 |||||| ||||| | |||||||| |||| |||| |||||||||||||||||||||| || Sbjct 700131 ACTTTCTCTCAGACTGAAATGTGACGTAGTTTCCCTGGATCTGGAGTCCAGGGACTTGCA 700190 Query 107465 GAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCAT 107524 || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 700191 AAGCCAGCACTGTAGGGACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAAGAGATCCAT 700250 Query 107525 CAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAA 107584 |||||||||||||||||| ||||||||||||||||||||| || |||| ||||| ||||| Sbjct 700251 CAACTGTTCTGGGATCACCCGAGGGGACCAGGAAGCAGTGATCAAGGCTCTCCTGGACAA 700310 Query 107585 CCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAG 107644 |||||| || ||||| |||||| |||| |||| | ||| | ||||||||||| ||||| Sbjct 700311 CCTGGAGGTCAAGAAGAAGCGGGAGCCTTTCACAGACACTGACTACCTCAACATGACCAG 700370 Query 107645 AGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGA 107704 |||||||||| || |||||| |||||| |||||||| |||||||||||| |||||||| Sbjct 700371 GGACTGTGAGCAGTTTAAGGCCAAAAGGAGGTTCATACGGTTCCCACTGAGCAAAGAAGA 700430 Query 107705 GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACG 107764 ||||||| ||||| || ||||| |||||||||||||||||| |||||||||||||| | Sbjct 700431 ATTAGACTTTCCCATCGCTTACTCTATGGTGGTCCATGAGAAGGTTGAAAACTTTGAAAG 700490 Query 107765 GCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTC 107824 |||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||| Sbjct 700491 GCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGTGTCCATGTAGATGAGAAGTC 700550 Query 107825 CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCAT 107884 |||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| Sbjct 700551 CCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATTATTTCATGCTTCCCGAATGTCTTCAT 700610 Query 107885 GGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAA 107944 ||||||||| ||||| | |||||||||||||||||||||||| ||||| ||||||||||| Sbjct 700611 GGCCAGTAAATTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAA 700670 Query 107945 CTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGG 108004 |||||||||||||||||||| |||| | ||||| ||||| ||||||||||| || ||||| Sbjct 700671 CTGTATGGAAGACTTGCTCCGGAGCCCGGTGCCGTGGAAATACTTACTGAACACCTGCGG 700730 Query 108005 GACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGG 108064 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 700731 GACAGACTTTCCTATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGG 700790 Query 108065 TAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCG 108124 ||||||||||||||||| ||| ||||| |||||| |||||| | |||||||||||| | Sbjct 700791 GAAGAACAGTATGGAGTCAGAGATACCTACTGAGTACAAAAAGACTCGCTGGAAATATCA 700850 Query 108125 CTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAA 108184 ||| || ||||||||||| || | |||| ||||||||||||||||||||||||||| Sbjct 700851 CTACGAAGTGACAGACACGTTGCAAGTAACCAACAAGATGAAGGACCCTCCCCCTGATAA 700910 Query 108185 TTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGT 108244 |||||| |||||||| |||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct 700911 TTTACCTATGTTCACGGGGAATGCCTATATTGTGGCTTCTCGAGGCTTTATCCAACATGT 700970 Query 108245 CTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGA 108304 |||||| ||||| ||||||||| | ||| ||||||||| ||||||||||||||||||||| Sbjct 700971 CTTAGAGAACCCCAAATCCCAACGGCTGATTGAATGGGCCAAAGACACCTATAGCCCCGA 701030 Query 108305 CGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCA 108364 |||||||||||||| |||||||||||||| || |||||||||||||||||||| ||| Sbjct 701031 TGAACACCTCTGGGCTACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCA 701090 Query 108365 CCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCA 108424 |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 701091 CCCCAAGTTTCACATCTCAGACATGATGGCCATCGCCAGGCTGGTCAAGTGGCAAGACCA 701150 Query 108425 CGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGC 108484 ||||||||| |||| |||||||| |||||||| || |||||||||||||| | | |||| Sbjct 701151 CGAGGGAGACATCAGTATGGGGGCACCTTATGCCCCTTGCTCTGGAATCCACCAGCGGGC 701210 Query 108485 CATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGC 108544 |||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 701211 TGTCTGTGTTTATGGGGCTGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGC 701270 Query 108545 AAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACG 108604 |||||||||||||| | |||||||||||| || || ||||||||||||||||| |||| Sbjct 701271 TAACAAGTTTGACCCCAAGGTGGATGATAATGTTCTTCAGTGCTTAGAAGAGTATTTACG 701330 Query 108605 TCATAAGGCCATCTATGGGACTGAACTTTGAG----------------CTGC--ACTGTG 108646 ||||||||||||||||| ||||||| |||| |||| | | | Sbjct 701331 CTATAAGGCCATCTATGGGGCTGAACTCTGAGATACACCTTGAGAGAACTGCTACCCGAG 701390 Query 108647 GGCCAGGGACTG-TGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGA 108705 || |||| || | || |||||||| ||| ||| |||| || |||||||| || ||| Sbjct 701391 GGGCAGGAACAGATGTAAACATGCCTAGGACGTGCTGGGACATTGTGGGGT-GGAGACCG 701449 Query 108706 GGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 ||||| ||||||||| |||||||||| | | || || ||||| Sbjct 701450 GGGCTCTGGAATCCACGGCATCCCCCGGTGGAAGGGGACTGCT 701492 >seq1143 Length=4558397 Score = 95.1 bits (104), Expect = 8e-15 Identities = 197/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||||| || || ||||| ||||| | ||||||||||| ||||| | | | Sbjct 3348493 GAGTGGGCAAAAGATACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAG-GAT 3348435 Query 108336 CCGTGGA-TGCCTGGCTC--TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATG-AC 108391 | || | | || ||||| ||| | || | ||||| |||| ||||||||| || Sbjct 3348434 GCCTGAAGTCCCAGGCTCACTGTCCTTAAGTTCT--AAGTACGACATGTCAGACATGCAC 3348377 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||| | || |||||||||||| || || ||||| || ||| || || Sbjct 3348376 T-CTATTGCCAGGTTTGTTAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGCCCC 3348318 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | || ||| || ||||| | | | | || ||| ||| ||||| ||| | Sbjct 3348317 CTACCCGCCGTGCAGCGGCATCCACGTGCGCTCTGTATGTGTTTTCGGAGCCGGTGACTT 3348258 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| || || || ||||| || || || ||||||||| Sbjct 3348257 GAACTGGATGCTGCACGTGCACCACCTGTTTGCCAATAAGTTTGAC 3348212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348212203490316