Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq558 131 2e-25 seq1615 120 4e-22 seq151 107 2e-18 seq1884 98.7 1e-15 >seq558 Length=2742737 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| || ||||| || |||||||| || ||||| | Sbjct 2658060 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 2658001 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2658000 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2657941 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 2657940 CTGTTTCTTATACCATA 2657924 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 2654188 CATACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 2654129 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||| | |||||| | || || ||||| || ||||| || | Sbjct 2654128 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 2654069 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 2654068 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 2654009 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 2654008 GTTTATTTGA 2653999 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 2649696 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2649637 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || ||||| |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 2649636 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 2649577 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 2649576 AGGCTCCAGGTAAATAGC 2649559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 || |||| ||| | || |||||| ||| | | | ||| |||||||| ||| || Sbjct 2646447 ATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCCCCAGCCGACTTG 2646388 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 || || ||||| ||| | |||| |||||||| |||||||| ||||||||||| |||| Sbjct 2646387 GAAATCAATGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTATCATCTTTCATA 2646328 Query 63627 TTAAGTAGAAAACAGCTA 63644 | || || ||||||||| Sbjct 2646327 CTCAGAAGGAAACAGCTA 2646310 >seq1615 Length=6207710 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||| ||||| || ||||| || || ||||| | Sbjct 3959932 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 3959873 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| ||||| ||||||| Sbjct 3959872 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3959813 Query 33724 C 33724 | Sbjct 3959812 C 3959812 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 3957817 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3957758 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || |||||||| |||||| Sbjct 3957757 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 3957712 >seq151 Length=1249255 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| ||| | |||||||| || |||| |||||||| ||| Sbjct 801884 GTTACTTTCTATGATGTGAATATTGTTCTGCAAGCTTTTATACTGACAACTGCAGTATTT 801825 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAA 188595 |||| | ||||| || |||||||||||| |||||||| ||||| || Sbjct 801824 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGACTTCAGCAA 801778 Score = 98.7 bits (108), Expect = 1e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299 || |||||||||||||||||| | |||||| ||| ||| ||| ||||| |||| ||| Sbjct 806133 GCCTTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACGGTGACA 806074 Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACA 188343 ||||| | |||||||||||||| | ||| ||||||||| |||| Sbjct 806073 TCTGCATTTTTTTTATACTTTGATTCCATACGGACATTTGTACA 806030 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 814991 TGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 814932 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 814931 ATCCGAATGG 814922 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || ||||||||||| |||||||| |||||||||| |||||||| || ||| Sbjct 804920 GGATCTTTGGGTTTGATTTTCGCCCTGACTTTAAACAGACATAAGCATCCCCTTAACCTG 804861 Query 188438 TACCTACTTTGTGGATTT 188455 ||||| |||| ||||||| Sbjct 804860 TACCTGCTTTTTGGATTT 804843 >seq1884 Length=2638154 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| ||||| || ||||| || || | ||| || Sbjct 1844781 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 1844840 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||||||||| | ||| || || || || ||||| |||||||| || ||||||||||| Sbjct 1844841 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 1844899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629712625151520