Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq151 176 6e-39 seq558 134 2e-26 seq1615 129 8e-25 seq1884 102 1e-16 >seq151 Length=1249255 Score = 176 bits (194), Expect = 6e-39 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | |||||||||| |||||||||||||||||||||| Sbjct 795237 TTTTTATTAACTGCTTCCAAAATCCGCAACAGATGCAGGAACAGATTGATGATATCCAAG 795296 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| || || ||||| || || ||| | || || |||||||| Sbjct 795297 TAGAGGCTGATGGCAGCTAATACGTACTCTTCGGGTGACAGCCTGTGCATCAGTGAGTGG 795356 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || | | ||| || || || |||| Sbjct 795357 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCTACACCAGCCAAGAGCAACTCC 795416 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 || || ||||| | | ||||| Sbjct 795417 ACCGTCTCACTGTAAAAAAATA 795438 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 ||| |||||| || ||||| |||||||| ||||||||||||||| |||||| | ||||| Sbjct 801766 CCTCCTCCAAACTTGCTGAAGTCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 801825 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||| ||||| || |||||||||| ||| | || |||||||||||||||||| Sbjct 801826 AATACTGCAGTTGTCAGTATAAAAGCTTGCAGAACAATATTCACATCATAGAAAGTAAC 801884 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9744 TGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAA 9803 |||| || | |||| ||| | |||||||||||||| | ||||| ||| |||| ||||| Sbjct 806030 TGTACAAATGTCCGTATGGAATCAAAGTATAAAAAAAATGCAGATGTCACCGTAGTTAAG 806089 Query 9804 AGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847 |||| ||| ||| ||||||| | |||||||||||||||||| || Sbjct 806090 AGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 806133 Score = 100 bits (110), Expect = 4e-16 Identities = 90/112 (80%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 814922 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 814981 Query 9907 TGGAGGAGCACGCGTAGAGG-----CTCGGCATGGCCATGGCGGCGCAGACC 9953 | |||||||| | |||| || || | || |||||| ||| |||||| Sbjct 814982 TCGAGGAGCAGGGGTAGCGGGGGTCCTGGTCA--GCCATGTTGGCACAGACC 815031 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 ||||||| |||||||||| | || |||||||| |||||||||| |||||||| ||||| Sbjct 804843 AAATCCAAAAAGCAGGTACAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAGGGCGAA 804902 Query 9692 AATCAAGCCTATAGAT 9707 |||||| || | |||| Sbjct 804903 AATCAAACCCAAAGAT 804918 >seq558 Length=2742737 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | Sbjct 2658060 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 2658001 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2658000 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2657941 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 2657940 CTGTTTCTTATACCATA 2657924 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 2654188 CATACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 2654129 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||| | |||||| | || || ||| | || ||||| || | Sbjct 2654128 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 2654069 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 2654068 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 2654009 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 2654008 GTTTATTTGA 2653999 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 2637984 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 2637925 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2637924 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 2637865 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 |||| || || || || ||| | || | |||||||| || ||||| Sbjct 2637864 ATTCCACAGTAGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 2637819 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 2649696 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2649637 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || ||||| |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 2649636 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 2649577 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 2649576 AGGCTCCAGGTAAATAGC 2649559 >seq1615 Length=6207710 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || ||||| | Sbjct 3959932 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 3959873 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 3959872 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3959813 Query 36300 C 36300 | Sbjct 3959812 C 3959812 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 3957817 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3957758 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 3957757 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 3957712 >seq1884 Length=2638154 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1844781 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 1844840 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||||||||| | ||||| || || || |||||||||||||| || || |||||||| Sbjct 1844841 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 1844899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658063099048560