Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq738 275 5e-69 seq3311 145 7e-30 seq1450 93.3 4e-14 >seq738 Length=1970462 Score = 275 bits (304), Expect = 5e-69 Identities = 493/716 (69%), Gaps = 7/716 (1%) Strand=Plus/Minus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || ||| ||| || ||||| ||| || || ||||| ||||| |||| ||| || Sbjct 1173142 CAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACC 1173083 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || ||||||| |||| ||| || |||| || || || || | ||||||||||||||| Sbjct 1173082 TGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTT 1173023 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || || || || ||||||||||| | |||| || |||||||||||||||||||| || Sbjct 1173022 GAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACC 1172963 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | | || || || ||||| ||| | ||| ||||| Sbjct 1172962 GTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTG 1172903 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC 21223 || ||||| || ||||| | ||| | | || | || | || ||| || Sbjct 1172902 TTTTGGATTCCAGGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTC 1172843 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 ||| | |||| ||||| || || | || || | | || | | ||| Sbjct 1172842 AGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTA 1172783 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC-GGC 21342 || ||||||||||| |||||||| || | ||| || || || ||||| || || | || Sbjct 1172782 TTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATCTCCTTCTCTGGT 1172723 Query 21343 GGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 || ||| ||| | || | |||| | | | |||||||| | |||||||| ||||| Sbjct 1172722 GGA----GAATCCCAG-GCTGTCCAAGACGCCTCGGGACCCATTGGCGTCCCAGATTTTC 1172668 Query 21402 ACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCC 21461 || || | ||||| || | | || ||||| ||| |||||||||||||||| ||| Sbjct 1172667 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCC 1172608 Query 21462 TCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGG 21521 |||| || ||| |||| || || | |||||| || | ||| ||||| || || |||||| Sbjct 1172607 TCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGG 1172548 Query 21522 TTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTC 21581 | || || ||||| | |||||||| ||| |||||| |||||| | ||| ||| || Sbjct 1172547 CTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCGTCCTTC 1172488 Query 21582 TGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTCGCCGTG 21637 | |||| | || | | | ||| |||||||||||||||| ||||| Sbjct 1172487 CGGGAGCCGCAGCGGAGGATGTACTTAATCTGCCCCAAGTACTGCAGCTCCCCGTG 1172432 >seq3311 Length=707574 Score = 145 bits (160), Expect = 7e-30 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||| ||||||||||||||| || | Sbjct 355812 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 355753 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||||||||||||||||||| || Sbjct 355752 GCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 355693 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | |||| || || ||||| ||||| ||| ||| || Sbjct 355692 CCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 355638 >seq1450 Length=2474494 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || ||||| || || ||||| ||| Sbjct 2026467 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAAT 2026408 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTC-ACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081 ||||| || | || | ||||||||||| | | ||| || ||||| || || ||||| Sbjct 2026407 TCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAGGTCGATTCTTCTCTGGAATGGA 2026348 Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| || || | || ||||| |||| ||||| || |||| | || || | | | Sbjct 2026347 GAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGCTGT 2026288 Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAG 3177 |||||| | | |||||| | | ||| || || || Sbjct 2026287 GGTCATTCTTTTGAAATACTTAAATTCATTCCTGAG 2026252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427706482924320