Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2140 134 3e-26 seq8397 116 9e-21 seq418 105 2e-17 seq591 100 7e-16 seq1615 89.7 1e-12 >seq2140 Length=878742 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || || ||| Sbjct 744591 ATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCA 744650 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || || || || |||||||| || |||||| Sbjct 744651 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGA 744710 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| ||||| || || ||||| || | ||| || || || || Sbjct 744711 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 744770 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || | || || || || |||||||||||| Sbjct 744771 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 744824 >seq8397 Length=2660 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||||||||| ||||| ||| |||| | ||| || || || ||||| | Sbjct 2157 GTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCCAGCTGTTTGCTC 2098 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || ||| || ||||| || || || || || || || || || ||||| Sbjct 2097 GCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTG 2038 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || ||| || || || || ||||| || || || ||||| || | || || Sbjct 2037 ACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATCAGGGTC 1978 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| | |||||| Sbjct 1977 TTCACAAAGACCTGCAT 1961 >seq418 Length=964272 Score = 105 bits (116), Expect = 2e-17 Identities = 243/365 (67%), Gaps = 12/365 (3%) Strand=Plus/Plus Query 65639 TCCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACAGAAAG 65698 |||||| ||||||||||| | || || ||||| || ||||| | | | Sbjct 659555 TCCAGTGGAACCAAAACCTCCTGAGCCCCTTTCAGTGTCATCTAACACTT---------G 659605 Query 65699 AGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTATCGCC 65758 | | ||| ||||||||| || || | |||| | |||| || || | || ||| || Sbjct 659606 AACTTCCTCTATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACC 659665 Query 65759 TTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCT 65818 || | | ||||| || || || |||||||||| || | |||||||| ||| | Sbjct 659666 CTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGT 659725 Query 65819 ATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGA 65878 ||| ||| |||| | |||||||| ||||||||||| |||| || || || || || Sbjct 659726 ATAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGA 659785 Query 65879 TCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAA--TCAGTAAAT 65936 || ||||||| ||| || || || || ||||| | ||| | ||| || || Sbjct 659786 ACGTGGAGCTACTCTCCCGTAGTACCCAGAAGGAAGAGCTAT-CTGAAATGTCGGTTTTC 659844 Query 65937 ACCAATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCT 65996 || | | || ||||||||| | | || ||| |||| || || || || ||||| || Sbjct 659845 ACAAGGGCCTTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCC 659904 Query 65997 GCAGC 66001 || || Sbjct 659905 GCGGC 659909 >seq591 Length=4273213 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | || ||||| ||||| || || | || || | || |||||||| | Sbjct 3772099 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 3772040 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || ||||||||||| | ||| |||||||| ||| Sbjct 3772039 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 3771980 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| ||||||| ||||| Sbjct 3771979 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 3771945 >seq1615 Length=6207710 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 3961180 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 3961239 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 3961240 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 3961299 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 3961300 TTTACCTTGGATGCTGACTTCTAA 3961323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151201692938472