Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq818 152 7e-32 seq1163 87.8 3e-12 >seq818 Length=4840570 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | || ||| |||||||||||| || | || || ||||| |||||| Sbjct 1761756 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTAAGCACATCACACACT 1761697 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 || |||||||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct 1761696 CTATTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1761637 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 ||| || || ||||| | ||| | ||| || || | ||||| |||||||| | Sbjct 1761636 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTTG 1761577 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||||| ||||||||| | || ||||||| || || |||| Sbjct 1761576 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAAT 1761533 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| ||||| || || |||||| ||| ||| | || Sbjct 1760633 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1760574 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || || |||||||| || Sbjct 1760573 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTACCCTGGGGGTC 1760514 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| |||||||||||| | | | ||| || || | Sbjct 1760513 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 1760454 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| | |||| || ||||| Sbjct 1760453 TTTCCTCCCTGAAAAATGAGAA 1760432 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || |||| || || ||||| ||| |||| Sbjct 1760108 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 1760049 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| || | |||| || ||||| | Sbjct 1760048 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTGTAAGTT 1759989 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||||||||||| || ||||| ||||| Sbjct 1759988 GGTGGGCTGTCAATCAGATGTGATCTTGCTGAA 1759956 >seq1163 Length=655972 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || ||||| || |||| | | || |||||| | || || || |||| | ||| Sbjct 130681 GTACTCACCCCGTGGCCCAATGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 130738 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 130739 TGAAGAACTGGTGAGTGAAGTGTTGCGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 130798 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | || || |||| |||||| Sbjct 130799 GGTCAGGTATGAACTTCCTCC 130819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708406706628960