Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq558 134 2e-26 seq1615 132 6e-26 seq1884 107 2e-18 >seq558 Length=2742737 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | Sbjct 2658060 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 2658001 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2658000 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 2657941 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 2657940 CTGTTTCTTATACCATA 2657924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 2649696 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2649637 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || ||||| |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 2649636 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 2649577 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 2649576 AGGCTCCAGGTAAATAGC 2649559 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 2654188 CATACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 2654129 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||| | |||||| | || || ||| | || ||||| || | Sbjct 2654128 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 2654069 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 2654068 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 2654009 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 2654008 GTTTATTTGA 2653999 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63456 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63515 || ||||| ||| | || |||||| ||| | | | ||| |||||||| ||| || Sbjct 2646447 ATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCCCCAGCCGACTTG 2646388 Query 63516 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATG 63575 || || ||||| ||| | |||| |||||||| || || || ||||||||||| |||| Sbjct 2646387 GAAATCAATGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTATCATCTTTCATA 2646328 Query 63576 TTAAGTAGAAAACAGCTA 63593 | || || ||||||||| Sbjct 2646327 CTCAGAAGGAAACAGCTA 2646310 >seq1615 Length=6207710 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||| ||||| || ||||| || || ||||| | Sbjct 3959932 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 3959873 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| ||||| ||||||| Sbjct 3959872 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3959813 Query 33446 C 33446 | Sbjct 3959812 C 3959812 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 3957817 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3957758 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | ||| || || Sbjct 3957757 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTC 3957698 Query 33684 CGCC 33687 | || Sbjct 3957697 CACC 3957694 >seq1884 Length=2638154 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1844781 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 1844840 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||||||||| | ||| || || || || ||||| |||||||| || ||||||||||| Sbjct 1844841 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 1844899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622843370275440