Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2140 176 8e-39 seq83 163 5e-35 seq8397 111 3e-19 seq590 98.7 2e-15 >seq2140 Length=878742 Score = 176 bits (194), Expect = 8e-39 Identities = 172/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || || ||||| || |||||||| ||||| || || || | Sbjct 744375 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 744434 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| ||||| || || ||||| || || ||||||||| Sbjct 744435 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 744494 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| ||| |||||||||||| ||| | || || |||| ||| Sbjct 744495 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTAGGCTCCACCTCCAGGGT 744553 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| ||||| |||||||| Sbjct 744554 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 744592 Score = 167 bits (184), Expect = 4e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || || ||||| || |||||||| ||||| || || || | Sbjct 744603 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGG 744662 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| ||||| || || ||||| || || ||||| ||| Sbjct 744663 CCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCC 744722 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| || |||||||||||| | || || |||| |||| Sbjct 744723 TTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 744782 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || ||||| | |||||| ||||| ||||||||| || Sbjct 744783 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 744824 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 744156 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 744215 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| ||||| || || ||||| || || ||||| ||||| || || Sbjct 744216 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 744275 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || |||||||||||| | || || |||| ||||||||| || Sbjct 744276 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 744335 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 744336 CCGGTCAGGGTCTTCACGAAGATCTGCAT 744364 >seq83 Length=833179 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || ||||| || || |||||||| || || || Sbjct 394664 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 394605 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||| |||||||| || || | || || ||||| || || Sbjct 394604 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 394545 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || || ||||| ||||| ||||||| |||||||||||| | || || Sbjct 394544 ATGCCCTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 394485 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| ||||||||| || ||||| | |||||| ||||| ||||||||| Sbjct 394484 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 394437 >seq8397 Length=2660 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| || || || || || || | || | ||||| || Sbjct 2169 ACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCC 2110 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || | || || || || || ||||| ||||| ||||| ||||||||||| Sbjct 2109 AGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 2050 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||| ||||||| | || || || | ||||||||| || Sbjct 2049 ATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTG 1990 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | |||||||| || || | |||||| Sbjct 1989 CCCATCAGGGTCTTCACAAAGACCTGCAT 1961 >seq590 Length=3402153 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| || | | ||||| || || || | ||||| || | ||| ||||| Sbjct 1072877 GTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCC 1072818 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 | ||| || || || ||||| ||||| ||||| |||||||||| || | || ||| Sbjct 1072817 GTGAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTG 1072758 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || || ||||||| | || || || || | |||||| || || || || |||||| Sbjct 1072757 ACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTC 1072698 Query 68445 TTGACGAATATCTGCAT 68461 || || || ||||| || Sbjct 1072697 TTCACAAAGATCTGTAT 1072681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921468788586480