Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2140 98.7 9e-16 seq2372 95.1 1e-14 seq590 87.8 2e-12 seq8397 86.0 6e-12 >seq2140 Length=878742 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 744168 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 744227 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | | |||||| || ||||| ||||||||||| ||| ||| || ||| Sbjct 744228 GCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 744287 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 744288 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 744347 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 744348 TTCACGAAGATCTGCAT 744364 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || |||||||| | ||||| | Sbjct 744378 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 744437 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | | |||||| || ||||| ||||| ||||| Sbjct 744438 TCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 744497 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| || ||| || || | ||| | Sbjct 744498 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATG 744557 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 744558 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 744592 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || |||||||| | ||||| | Sbjct 744606 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 744665 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | | |||||| || ||||| ||||||||||| Sbjct 744666 TCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTA 744725 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| || || | ||| | Sbjct 744726 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 744785 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || || || |||||||| Sbjct 744786 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 744820 >seq2372 Length=486337 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAA---TATTGTAATCGCCCATCGTGCGAGAATC 126960 ||| || || | || ||||| || |||| ||||||| || || |||| ||| Sbjct 216837 CACTAAGTGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCTGACAGAGTGCAGCCATC 216896 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 ||||||||||| || | | |||| |||||||||| || || |||||||||||||| Sbjct 216897 CTCTAGCTGTTTGCCCACAAAAATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTTGTC 216956 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 | |||||| |||| | || |||||| | ||| || |||| ||| | || Sbjct 216957 CTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 217016 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||||| || || ||||| |||||||| Sbjct 217017 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 217049 >seq590 Length=3402153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | ||| |||| | || |||||||| |||| || |||||| || || || Sbjct 1072898 AAACGAAGCACTGAATGCAAGGTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGG 1072839 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || |||||||| || | | | |||| ||||||| || || || ||||||||| Sbjct 1072838 CCATCCTCCAGCTGTTTCCCCGTGAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCC 1072779 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 ||||| |||| | |||| | | |||||| || ||| || |||| ||| Sbjct 1072778 TTGTCTTAGATTGTAGCTTTGACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTG 1072719 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || ||||| ||||| || || ||||| ||||| || Sbjct 1072718 ATAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGTAT 1072681 >seq8397 Length=2660 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || |||||||| ||||||||||| || |||||| ||| || Sbjct 2170 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTC 2111 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| | || | |||| ||||||| || || || |||||||||||||| Sbjct 2110 CAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 2051 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| |||| | || |||||| | ||| || || | ||| | || || Sbjct 2050 GATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 1991 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||| || || ||||| | |||||| Sbjct 1990 GCCCATCAGGGTCTTCACAAAGACCTGCAT 1961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475421545904160