Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1122 246 2e-59 seq383 131 1e-24 seq1118 104 2e-16 seq3920 102 6e-16 seq473 98.7 8e-15 >seq1122 Length=1361222 Score = 246 bits (272), Expect = 2e-59 Identities = 745/1136 (66%), Gaps = 30/1136 (3%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| ||||||||| || ||||||||||| | |||||| ||||||||||| Sbjct 1262895 TTATCCACAGCAGACACATTAAGGATTCCATTGGCATCAATATCAAAAGTGACTTCAATC 1262836 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 517367 ||||| || || | | ||||| || || ||| | || || || ||| | || | Sbjct 1262835 TGAGGAACGCCACAGGGGGCAGGAGGAATGCCTGTGAG-TTCAACCTTGCCA-AGTAGGT 1262778 Query 517368 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 517427 | ||||| || || | | ||||| || ||| || || || ||| || | Sbjct 1262777 TGTTATCCTTGGTCATGGCATGCTCACCATCATAAACCTGAATGAGCACACCAGGCTGGT 1262718 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 517487 | || || || || || || | | | ||| ||||| || || || | | Sbjct 1262717 TGTCGGAGTAGGTGGTGAAGGTTTGCGTCTGCTTAGTGGGAATGGTGGTATTGTGCTTGA 1262658 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | ||||||| | ||||| || |||| | ||||| ||||||||||||||||| | Sbjct 1262657 TGAGGATGGTCATGACTCCACCAGCAGTTTTGATTCCAAGGGAAAGAGGAGTGACATCCA 1262598 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 ||| | | | ||||| |||||| | | ||| | ||| ||||| || | || Sbjct 1262597 ATAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAAAATGGCTGCCTGGACAG 1262538 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| |||||||| |||||||| || | | | ||| |||| ||| ||||||| Sbjct 1262537 CTGCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTCCCATTGA 1262478 Query 517668 AAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | || | ||||||| ||| | | | || ||||| | ||| ||||| || | ||| Sbjct 1262477 AGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGGTTGAGCCTCCCACCAGGACA 1262419 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 || ||||| | ||| || || || ||||||| |||| | |||| || || || || Sbjct 1262418 ATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAGGAGCTTTCTCCACAGGGTCC 1262359 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || | | |||| ||| | | | |||||| ||| || | |||| || | | Sbjct 1262358 AGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATCGGGCACGGGTAATAGAGGTA 1262299 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG---TCGAAGAA 517903 | | || |||||||| | | ||||||| ||||| | || | | |||| | Sbjct 1262298 TAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGACCTGGGTGCTGGAAG-A 1262240 Query 517904 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGC 517959 || ||||||| |||||||| ||||| || || | || | || | || ||| | | Sbjct 1262239 GAGAGTGCAC--TTAGCACGCTCACAAGCAGTGCAGAGGCGACGGACAGCCCTCTTGTTC 1262182 Query 517960 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACA 518017 | |||| || | || | |||| |||||| ||| ||| | | ||| | || Sbjct 1262181 TCGCTGAT----GTCCTTCTTGTGCTTTCGCTTGAACTCTGCAATAAA--ATGGTTGACG 1262128 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 | || || ||||| || || || || || | |||| ||| | |||| | | || | Sbjct 1262127 ATTCGGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTCCGGCAGTAGATTTGACATCA 1262068 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTT---ACATCATGGGTTCCACCACCCATATCA 518134 || | |||||| |||| || ||| ||| |||||| || |||||||||| ||| Sbjct 1262067 AAGATTCCATCCTCAATAG---TAAGGGTTGACACATCAAAAGTGCCACCACCCAAGTCA 1262011 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || ||||| |||| | |||| || | |||| |||| ||||||| Sbjct 1262010 AAGATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTAAGCCATTAGCAATAGCAGCA 1261951 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 |||||||| |||||||| ||||| | || || ||||||||||| |||| |||||||| Sbjct 1261950 GCAGTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAGCAATAGTTCCAGCATCTTTG 1261891 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || || || || || || || ||||| | || || || | | | |||| || || Sbjct 1261890 GTAGCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTGTGACATCAGCATTGGTAACA 1261831 Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGA 518370 || |||| || || ||| |||| | ||| || | |||| || ||||| Sbjct 1261830 GTCTTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTGTCAAAACCACGGATGA 1261775 >seq383 Length=851692 Score = 131 bits (144), Expect = 1e-24 Identities = 366/554 (66%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 518165 |||||| || || ||||||| |||||| || || || | || | || || | || | Sbjct 466900 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 466959 Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 || | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || | Sbjct 466960 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 467017 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | ||||| ||||| |||||||| || ||||| || | || || || || ||||| | Sbjct 467018 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 467077 Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345 | || || || || || |||| || || | || | | |||| || || | | Sbjct 467078 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 467137 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTT 518404 |||| ||| | | | ||| || || |||| || ||| | | |||| | || | Sbjct 467138 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGGTAGAAA-GCTTTTTTCTCCCCT 467196 Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464 | || || || | | || || || |||| || |||| ||| ||||| | Sbjct 467197 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 467256 Query 518465 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 518524 |||||||||||||| || | |||||||| | || ||||| | ||||| |||||| Sbjct 467257 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 467316 Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 || | ||| || |||||| || || | || | ||||| ||||| || || || | Sbjct 467317 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 467376 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 || || || || || | ||||| || || ||||| || || || || || || || Sbjct 467377 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 467436 Query 518645 ATTTCAACTTTACC 518658 || || || || || Sbjct 467437 ATCTCCACCTTGCC 467450 >seq1118 Length=444220 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 178448 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 178389 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||||||||| | ||||| ||||| || |||||||||||| | | |||||| | Sbjct 178388 GTGGTTGGAAGAGACAAATATGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 178329 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 178328 GAAGCTTCTCATAAA 178314 >seq3920 Length=2460292 Score = 102 bits (112), Expect = 6e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || ||||| ||||| ||||| ||||||||| | |||||| | || ||||||| Sbjct 324882 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 324941 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 324942 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 325001 Query 367118 G 367118 | Sbjct 325002 G 325002 >seq473 Length=3117084 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 1840063 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 1840122 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 1840123 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 1840182 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 1840183 GCGGGTACTGTGACCACAGCAT 1840204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780160722997804