Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2140 143 6e-29 seq8397 109 1e-18 seq590 96.9 8e-15 seq642 93.3 9e-14 >seq2140 Length=878742 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 744384 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 744443 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| ||||| |||||||| || || || Sbjct 744444 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 744503 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| | ||||| || ||||| | ||||| Sbjct 744504 ATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTG 744563 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 744564 CCGGTCAGGGTCTTCACGAAGATCTGCAT 744592 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 744612 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 744671 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| ||||| ||||| || || || || Sbjct 744672 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 744731 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 744732 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 744788 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || ||||| | ||||||| Sbjct 744789 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTT 744822 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 744156 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 744215 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| ||||| ||||| || || || || Sbjct 744216 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 744275 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 744276 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 744332 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 744333 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 744364 >seq8397 Length=2660 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| ||||||||||| || | |||| | ||||| || ||||| Sbjct 2164 GTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCCAGCTG 2105 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || | || || || || | || ||||| || || ||||| || |||||||| ||||| Sbjct 2104 TTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 2045 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||| ||||||| ||| || || |||||||| | ||||| || Sbjct 2044 AGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 1988 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || || ||||| Sbjct 1987 CATCAGGGTCTTCACAAAGACCTGCAT 1961 >seq590 Length=3402153 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| |||| || |||||| | ||||| | ||||| || ||||| || || Sbjct 1072877 GTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCC 1072818 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 | ||| || || | || ||||| || || ||||| || ||||||| ||| | ||| Sbjct 1072817 GTGAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTG 1072758 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||| | ||||||| | || || || ||||| | ||||| ||||||| || Sbjct 1072757 ACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTC 1072698 Query 195124 TTTACGAA 195131 || || || Sbjct 1072697 TTCACAAA 1072690 >seq642 Length=3842526 Score = 93.3 bits (102), Expect = 9e-14 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || ||||| | Sbjct 2701444 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AGAGTACGT 2701499 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 | ||||| | ||||| | || |||||| ||| ||| || | ||| |||| ||||| Sbjct 2701500 CTGTCTTCCGGTTGCTTCCTAGCAAAGATAGGTCTTTGCTGATTGGGAAGAATTCCTTCC 2701559 Query 195043 TTGTCTTGAATTTT 195056 || ||||| || || Sbjct 2701560 TTATCTTGGATGTT 2701573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109292054083178