Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1615 120 3e-22 seq558 111 2e-19 seq1884 84.2 2e-11 >seq1615 Length=6207710 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| |||||||| | || ||||||||||||| || | Sbjct 3959932 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 3959873 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 3959872 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3959813 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 3959812 CTACAACACGTTCTCC 3959797 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || | ||| |||||||| Sbjct 3961323 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATC 3961266 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 3961265 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 3961206 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 3961205 TCCATAAAGTCAAATGGATTTTCTAC 3961180 >seq558 Length=2742737 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| ||| | || || ||||| || || ||||| || || Sbjct 2658057 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 2657998 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| ||||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 2657997 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2657938 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 2657937 TTTCTTATACCATA 2657924 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/171 (73%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| |||| |||| || | |||||| || | Sbjct 2660445 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAATTAGGCTCAGCAATATGTATGT 2660386 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| ||||||||| |||| | || Sbjct 2660385 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCC--ATCTTGAGTACGGT 2660328 Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 2660327 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 2660277 >seq1884 Length=2638154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 1835397 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 1835456 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 1835457 ATAAAATCAAAGGGATTTT 1835475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562015110515760