Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1122 154 1e-31 seq473 116 3e-20 seq1387 105 5e-17 seq475 86.0 5e-11 seq157 86.0 5e-11 >seq1122 Length=1361222 Score = 154 bits (170), Expect = 1e-31 Identities = 551/850 (65%), Gaps = 16/850 (2%) Strand=Plus/Plus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 || ||||| ||||| ||| | ||||| |||||| | || ||||||| || || Sbjct 1262054 GAGGATGGAATCTTTGATGTCAAATCTACTGCCGGAGATACCCACTTTGGTGGAGAGGAC 1262113 Query 551817 TTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACGAAAAAACAA--AGT 551872 ||||| || || | || | ||| | | ||| ||| || || ||||| |||| || Sbjct 1262114 TTTGACAACCGAATCGTCAACCAT--TTTATTGCAGAGTTCAAGCGAAAGCACAAGAAGG 1262171 Query 551873 TGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAA 551932 ||| | | | | | | ||| | ||||| || | |||||||| || | || || Sbjct 1262172 ACATC-AGCGAGAACAAG-AGGGCTGTCCGTCGCCTCTGCACTGCTTGTGAGCGTGCTAA 1262229 Query 551933 ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAAT 551992 | |||| || || | || || || |||||| | ||||| | | ||| ||||| Sbjct 1262230 GTGCACTCTCTCTTCCAGCACCCAGGTCAGTATTGAGATTGATTCCCTCTATGAAGGAAT 1262289 Query 551993 TGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAG 552052 || | |||| ||||| | | ||| ||||||||| | | |||| || || | Sbjct 1262290 CGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAATTAAATGCTGACCTGTTCTG 1262349 Query 552053 AAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGT 552112 || | || || || || ||| | | ||| |||| | || || || | | Sbjct 1262350 TGGCACCCTGGACCCTGTGGAGAAAGCTCCTCGGGATGCAAAACTAGACAAGTCTCAGAT 1262409 Query 552113 ACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTA 552170 ||||| ||||| || || || || || || | || || | |||| |||| | | Sbjct 1262410 CCATGACATTGTCCTGGTGGGAGGCTCAACCCGTATCCCCAGGATTCA-GAAACTTCTGC 1262468 Query 552171 AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCC 552230 || ||| || |||||| ||| || | ||| | || | || || |||||||||||||| Sbjct 1262469 AGGACTTCTT-CAATGGGAAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCT 1262527 Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAAT 552290 |||||||| || | || ||||| ||| | |||||| | | |||||| | ||| | Sbjct 1262528 TATGGTGCAGCTGTCCAGGCAGCCATTTTATCTGGAGACAAATCTGAAAATGTTCAAGAC 1262587 Query 552291 ATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATG 552350 | | || | ||||| |||||||| || ||||| | |||| | ||| || | ||| Sbjct 1262588 TTGCTGCTATTGGATGTCACTCCTCTTTCCCTTGGAATCAAAACTGCTGGTGGAGTCATG 1262647 Query 552351 ACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACG 552410 || | || ||| | ||||| || ||||| ||| | | | || | || Sbjct 1262648 ACCATCCTCATCAAGCACAATACCACCATTCCCACTAAGCAGACGCAAACCTTCACCACC 1262707 Query 552411 TATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAG--GAGAAAGAAAATTCA 552468 || || || || || ||| ||| ||||| ||| ||| | ||| | | | | | Sbjct 1262708 TACTCCGACAACCAGCCTGGTGTGCTCATTCAGGTTTATGATGGTGAGCATGCCA--TGA 1262765 Query 552469 CTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTG 552528 | || ||||| || | |||||| | || | | ||| ||||||||||| || ||| Sbjct 1262766 CCAAGGATAACAACCTACTTGGCAAGGTTGAACTCACAGGCATTCCTCCTGCCCCCTGTG 1262825 Query 552529 GAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTG 552588 | || || || |||||||| ||||| ||||| |||||||||||||| | |||||| ||| Sbjct 1262826 GCGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGAATCCTTAATGTGTCTG 1262885 Query 552589 CTTGTGATAA 552598 || ||||| Sbjct 1262886 CTGTGGATAA 1262895 Score = 105 bits (116), Expect = 5e-17 Identities = 331/507 (65%), Gaps = 7/507 (1%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| ||||| | | | || ||||| || | ||||| |||||| || ||| | Sbjct 1261465 TGTGTGGGTGTCTTCTAGCACGGGAAAGTAGAGGTACTTGCCGGTGATCAGGGAAACCCA 1261524 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-ATTTA--GTTGGTGATGCAGCA 550141 || | ||| | |||| ||||||| | | ||| ||| | ||| |||||| ||| Sbjct 1261525 ACCGCCCCAAGCTGTGTTGCTTTCACCCATATCGAATGATTGATCGTT--TGATGCTGCA 1261582 Query 550142 AAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 || | |||| | || || |||| || |||||||||| ||| | | |||||| Sbjct 1261583 AAGAACCAAGTTGCGATGAACCCCACCAGCACCGTTTTTGATGCCAAATGCCTCATTGGA 1261642 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 |||| ||| || || | ||| || | |||| |||||||||| | ||| | || Sbjct 1261643 CGAAGATTTGATTATGCTGTTGTCCAATCTGATACGAAGCATTGGTCCTTCATGGTGGTG 1261702 Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321 |||| | || | ||| | | | | | | | ||| ||| || | Sbjct 1261703 AATGACGCAGGCAGGCCTAAGGTCCAGGTAAAATACAAGGGAGAGACAAAAAGCTTGTAT 1261762 Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 ||||| | | ||||| ||||||| | || ||| | |||| || || | || Sbjct 1261763 CCAGAGGAGGTGTCATCCGTGGTTTTGACAAAGATGGAGGAAACTGCAGAAGCCTACCTT 1261822 Query 550382 GGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 || |||| ||||| |||| | | || ||||| | ||||| |||||||| || | Sbjct 1261823 GGG-AAGACTGTTACCAATGCTGATGTCACAGTACCCACTTATTTCAATGACTCTCAGCA 1261881 Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 ||| ||||| |||||||||||| ||||||||| || || || ||| | || || ||||| Sbjct 1261882 TCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAAAGTACTTAGAATCATTAATGA 1261941 Query 550501 ACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||||||||| |||| |||| Sbjct 1261942 GCCAACTGCTGCTGCTATTGCTAATGG 1261968 >seq473 Length=3117084 Score = 116 bits (128), Expect = 3e-20 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| || || || |||||||| || ||||| || || Sbjct 1840211 GTTACCAATGCTGTGGTCACAGTACCCGCTTACTTCAATGACTCTCAGCGTCAGGCGACC 1840152 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||| | || |||||||| || |||||| Sbjct 1840151 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT 1840092 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 1840091 GCTGCTATTGCTTATGG 1840075 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || || ||||| || | ||||| | ||| | | ||| ||||||||||| || ||| Sbjct 1838758 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 1838699 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || || |||||||| ||||||||||| ||||||||||| || | |||||| || Sbjct 1838698 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 1838639 Query 552588 GCTTGTGATAA 552598 ||| ||||| Sbjct 1838638 GCTGTGGATAA 1838628 >seq1387 Length=1043954 Score = 105 bits (116), Expect = 5e-17 Identities = 284/423 (67%), Gaps = 25/423 (6%) Strand=Plus/Plus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| ||||| || |||||||| ||| | ||||| ||| || | |||| |||||| Sbjct 421377 ATGGAAAAGTAGAGATTATTGCTAATTACCAAGGCAACTTTACCAGTCCAAGTTATGTAG 421436 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATC 550163 ||||||| ||| |||||| | | ||| | | || | |||| | ||| | | Sbjct 421437 CTTTCAC--AAAGTGAACACCTGATCAATGAGGTTTCTAAGAACCAAGAGGC-GGTGAAC 421493 Query 550164 CT-ACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || |||||||| || ||||||||||| | | ||||| | | ||| ||||| | || Sbjct 421494 CTCACCAATACCATCTTTGATGCTAAGAGGCTGATTGGTTGCAAGTTTGATGATGCCACA 421553 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT--- 550279 |||||| |||| |||||||| |||||||||||| | || || ||||| ||| Sbjct 421554 GTTCAGTCAGA-ATGAAGCACTGGCCTTTCCAAGTGATTTGTGAAAAGGGAAAGCCTAAA 421612 Query 550280 TATATTGAAGCTACTCATGAAGGATCTGTTAAACAA--TTTTCACCAGAACAAATTTCAT 550337 | ||| || | || |||| ||| || ||||| ||||| | | || | Sbjct 421613 GAAATT---GCAAAATATAAAGG-------AAATAATTTTTTCCCCAGAGGAGGTGTCTT 421662 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGC--CAGTGCTTTTGTTGGTCAAGAAGTTAC 550395 | |||||| ||| | | |||||| | | || ||| || || | || || ||| || Sbjct 421663 CCATGGTTCTAA-GCAGATGAAAGAGATTGCTGAAGT-CTGTT-TAGGGAAAAAAGGTAG 421719 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||| |||| ||||| ||| | || || ||||| ||||| |||| || || || || Sbjct 421720 AAATGCAATAATTACTGTTCCAACCTACTTAAATGATTCACAGTGTCAGGCCACCAAGGA 421779 Query 550456 TGC 550458 || Sbjct 421780 AGC 421782 >seq475 Length=3541769 Score = 86.0 bits (94), Expect = 5e-11 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 552488 TGGTACTTTTAATTTAGAA-GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 ||||| |||| | |||| || |||||||| || ||||||||||| || || ||||||| Sbjct 2904067 TGGTA--TTTATTCTAGATTGGAATTCCTCCAGCCCCTCGTGGAGTCCCTCAGATTGAAG 2904010 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||| || || || ||||||||||| ||| || |||| |||| Sbjct 2904009 TTACATTTGACATTGATGCCAATGGGATTGTGCATGTTTCTGC 2903967 >seq157 Length=3278046 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 |||||||||||||| | ||| | | |||||| ||||| || || ||||| || ||||| Sbjct 1269480 AATATTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 1269421 Query 563352 TTGCTGATCAGGAGGAATTCCT 563373 |||||| ||||||||||||||| Sbjct 1269420 TTGCTGGTCAGGAGGAATTCCT 1269399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028590837943660