Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1122 170 1e-36 seq383 122 6e-22 seq473 114 8e-20 seq3920 89.7 3e-12 >seq1122 Length=1361222 Score = 170 bits (188), Expect = 1e-36 Identities = 485/732 (66%), Gaps = 14/732 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||| | |||| ||||| || || | | |||| || Sbjct 1262210 ACTGCTTGTGAGCGTGCTAAGTGCACTCTCTCTTCCAGCACCCAGGTCAGTATTGAGATT 1262269 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| |||||| | || ||||||||| Sbjct 1262270 GATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 1262329 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| || | ||| | Sbjct 1262330 TTAAATGCTGACCTGTTCTGTGGCACCCTGGACCCTGTGGAGAAAGCTCCTCGGGATGCA 1262389 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| || || ||||||| ||||| || || ||||| ||||| | || || Sbjct 1262390 AAACTAGACAAGTCTCAGATCCATGACATTGTCCTGGTGGGAGGCTCAACCCGTATCCCC 1262449 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 | || ||||| | || | | || ||||| ||| | | ||| | || | || Sbjct 1262450 AGGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAATAAGAGCATCAA 1262508 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATC 475854 |||||||| |||||||| ||||| || |||||||| ||||| |||||||| || | | Sbjct 1262509 CCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATTTTATCTGG--AGAC 1262566 Query 475855 AGACGAGAAACTAAATAATA-TTG-TACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 | | |||| | || | ||| | || | || || ||||| ||||| | || | Sbjct 1262567 AAATCTGAAAATGTTCAAGACTTGCTGCTATTGGATGTCACTCCTCTTTCCCTTGGAATC 1262626 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 |||| | ||| || | ||||| | || || | ||||| | || || || Sbjct 1262627 AAAACTGCTGGTGGAGTCATGACCATCCTCATCAAGCACAATACCACCATTCCCACTAAG 1262686 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 | | || || |||| || || || || || | ||| ||| || | | | Sbjct 1262687 CAGACGCAAACCTTCACCACCTACTCCGACAACCAGCCTGGTGTGCTCATTCAGGTTTAT 1262746 Query 476033 GAAGGTGA--AAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAG 476090 || ||||| | | | | || || ||||| ||| |||||| | || | || || Sbjct 1262747 GATGGTGAGCATGCCA--TGACCAAGGATAACAACCTACTTGGCAAGGTTGAACTCACAG 1262804 Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150 | ||||||||||| ||| | || |||||||| |||||||| ||||||||||||||||| | Sbjct 1262805 GCATTCCTCCTGCCCCCTGTGGCGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCA 1262864 Query 476151 ATGGTATTCTTAATGTTACTGCTTGTGATAA-ATC-TAGTAACAAGAGTAAAAATATAAC 476208 |||| || |||||||| ||||| ||||| | | || | ||||| || || || || Sbjct 1262865 ATGGAATCCTTAATGTGTCTGCTGTGGATAAGAGCACAGGGA-AAGAG-AACAAGATTAC 1262922 Query 476209 TATTACAAACAA 476220 || |||||||| Sbjct 1262923 CATCACAAACAA 1262934 >seq383 Length=851692 Score = 122 bits (134), Expect = 6e-22 Identities = 326/493 (66%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442 || || || || || || ||||| ||||| || || | || || || ||||| | Sbjct 467450 GGCAAGGTGGAGATCATCGCCAACGACCAGGGGAACCGCACCACCCCCAGCTATGTGGCC 467391 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 || || || || || | || || || ||||| || || | || | || ||||| Sbjct 467390 TTCACGGACACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCATGAATCCA 467331 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | || Sbjct 467330 CAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTG 467271 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 ||||| |||||| | |||||||||| | || || |||| || || || || | || Sbjct 467270 CAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTA 467211 Query 474623 GAAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 | | | | || ||| || | ||| || | || || |||| ||||| ||||| Sbjct 467210 -ATGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCTATGGT 467152 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | || ||||| | || || ||| | | | | || || || || |||| | Sbjct 467151 ACTGACTAAGATGAAGGAGACTGCTGAGG-CTTTTTTGGGCCACACTGTCACCAATGCTG 467093 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| ||||| ||||| ||||| || || || || || ||||| || Sbjct 467092 TGATCACCGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCAGGTG 467033 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||||||||| || || || | ||||| || ||||| ||||| || || |||||| Sbjct 467032 TGATTGCAGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCTT 466973 Query 474861 ATGGTCTTGATAA 474873 |||| | ||||| Sbjct 466972 ATGGCTTAGATAA 466960 >seq473 Length=3117084 Score = 114 bits (126), Expect = 8e-20 Identities = 223/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| |||| ||||| || || | | | |||| || Sbjct 1839751 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGTATTGAGATT 1839692 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | | |||| |||||| | || ||||||||| Sbjct 1839691 GATTCCCTCTATGAAGGAATCGACTTTTATACCTCTATTACCCGTGCCCGATTTGAAGAA 1839632 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| ||| | ||| | Sbjct 1839631 TTAAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCTCTTCGGGATGCG 1839572 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||||||||| ||||||| || || | || ||||| ||||| | || || Sbjct 1839571 AAACTGGACAAATCACAGATCCATGACATCGTCTTGGTGGGAGGCTCAACTCGTATACCC 1839512 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | || | | || ||||| ||| | | ||| | || | || Sbjct 1839511 AAGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAATAAGAGCATCAA 1839453 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||| |||||||| ||||| || Sbjct 1839452 CCCTGATGAGGCTGTTGCTTATGGTGC 1839426 Score = 102 bits (112), Expect = 5e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| ||||||||||| ||| | Sbjct 1838758 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 1838699 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||| ||||||||||| ||||| || |||||||| || Sbjct 1838698 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 1838639 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 1838638 GCTGTGGATAA 1838628 >seq3920 Length=2460292 Score = 89.7 bits (98), Expect = 3e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || |||||||| || || || ||||| ||| || | ||||| |||||| Sbjct 325002 CCATCACGGCCAGCTCTACCAATCTCCTGGTAATATGATTCCATTTCCTTAGGAGCGCCA 324943 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887 ||||| || ||| | ||||| | ||||||||| ||||||||||| || || || || Sbjct 324942 TAATGAATGACTTTGCGAACATCAGCTTTATTAATGCCCATTCCAAAAGCTATGGTAGC 324884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267607240043432