Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1143 383 2e-101 seq157 172 6e-38 seq963 104 3e-17 >seq1143 Length=4558397 Score = 383 bits (424), Expect = 2e-101 Identities = 680/985 (69%), Gaps = 9/985 (1%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| ||||||| ||| |||| ||| || | ||| | |||| ||| || ||| Sbjct 3348162 TGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTGTGTCAAACTTA 3348221 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || ||||| ||||| ||| | || ||||||| || ||| |||| ||||| || Sbjct 3348222 TTGGCAAACAGGTGGTGCACGTGC---AGCATCCAGTTCAAGTCACCGGCTCCGAAAACA 3348278 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | ||| | |||| |||| |||||||| | || || || | || ||| Sbjct 3348279 CATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACATCA 3348338 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| ||||||||||||| ||||||||||| || | |||||||| || ||||||| Sbjct 3348339 CCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTGACATGTCGTAC 3348398 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | | || | | || || || | ||||| | ||| | |||||||| || Sbjct 3348399 TTAGAACTTAAGGACAGTGAGCCTGGGACTTCAGGCATCCTCTGAATAGTGGCCCAGAGA 3348458 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | ||||| |||||||| || || || | ||| ||||| |||| |||| | | Sbjct 3348459 TACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCTGGATTTTTTCATTC 3348518 Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466 || || | || || || | || ||||| || |||||||| || || | | Sbjct 3348519 TCAAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCGCTGCCTGAAAACAGC 3348578 Query 160467 GGTATGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 || | | ||| || ||| ||| ||| || |||| | || | ||| || || Sbjct 3348579 GGCGTTTCAAGAGGAGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTAAC 3348637 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 || | | |||| |||||||| | | || || | ||||| || || ||||| Sbjct 3348638 CACTGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCATTTTCTCGGTTTCTAG 3348697 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||| | || | ||| || |||| | |||| || || ||||| || || | ||| Sbjct 3348698 GTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATCGG 3348757 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 ||| || ||||||| | || |||| ||||||||| | ||| |||| | || ||||| Sbjct 3348758 AAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCACTCATTTTGTAGAGGTC 3348817 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 | |||||| || || || ||||| || |||||||| || || ||||| || |||| || Sbjct 3348818 CTGCATGCAGTTGATGTCAGCCTGAACCCGGCTCCACGAGGCATACACCACACTCTCCAG 3348877 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAG 160823 || ||||||||||| |||||| |||||| ||| | || || | ||| | ||| ||| Sbjct 3348878 TTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAATCACTG-CAGCCAAAA 3348936 Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 | || | || | ||| ||||||||| | ||| || | ||||||||| |||||| Sbjct 3348937 AGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATG 3348995 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 ||||| || | ||| |||| ||| || || || ||||| | ||| ||||| || ||||| Sbjct 3348996 GCCCTCAGGAGCCTGTCGAGCATTTCGATTTTGTGATGAACCACTATAGAATATGCTATT 3349055 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 |||||||| | ||| || ||| |||| | | ||| || ||| ||||||| ||| Sbjct 3349056 GGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTGCGCTTCTTGATGAAA 3349115 Query 161004 TAATCACAATCCCGCGTCATGTTGA 161028 | ||||||| | |||||||||| Sbjct 3349116 GCAGCACAATCACTGGTCATGTTGA 3349140 >seq157 Length=3278046 Score = 172 bits (190), Expect = 6e-38 Identities = 218/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 ||| || ||||| || || || || || |||||||||||| || | || || || ||||| Sbjct 3275918 TCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACACCCCTCATCCTC 3275977 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || |||||||||||| || || | |||||||| ||| |||| || || ||||| | Sbjct 3275978 CAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCCAGTTGGGTGATGTTTAT 3276037 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 || ||||| | ||| || |||||||| || |||||||||||||||||| |||||| Sbjct 3276038 CTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGTTCTCGCTGAAGGTGATCATGTT 3276097 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409 |||||||| ||||| || || ||||| || || |||| || |||| | || Sbjct 3276098 TTCCGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAGACTTCTTGGGGATTTTG 3276157 Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 ||| || || || | || || || ||||||||| | |||| |||| || || || || Sbjct 3276158 CAGAGAGCAGCTTAAAGAGGCAGGTGTGTTCAGCGGCTCTCTTACATCCTGGGTCACCAC 3276217 Score = 114 bits (126), Expect = 1e-20 Identities = 167/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 167871 CCATTGCTAAGCGTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATAT 167929 || ||| | | ||||| || ||| || || ||||| |||| | || |||| ||| || Sbjct 3273288 CCTTTGTTCACCGTTTCCCTGTA-GTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGAT 3273346 Query 167930 CACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACT 167989 |||||| || || || |||||||| || ||||| || || | ||||| || ||| Sbjct 3273347 CACCTCC---TTCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGA 3273403 Query 167990 TGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCAC 168049 ||| || |||||| | ||| | | | | || |||||||||||||| || || | || Sbjct 3273404 TGTTGTCCCATTGGGGTGTGAGAGAATCTCAGTACTGTTCTCAATCCCCGACCCAGAGAC 3273463 Query 168050 CTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||||| | || ||||| || || || || | |||||||| || ||||||| Sbjct 3273464 CTTCCAGGAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 3273516 >seq963 Length=3107633 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 176211 TTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTA 176270 |||||| | |||| | | ||||| ||| |||| |||| || |||| |||||| | Sbjct 920644 TTGTTTTTGTCTACTTCCTTCAGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCC 920703 Query 176271 ACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAA 176330 ||||| || |||| | || |||||| || || ||||| |||| || || || || ||| Sbjct 920704 ACATGAATGAATGAATCTGCTGGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAAA 920763 Query 176331 ACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTG 176390 || | || || | | || | || | | ||||| |||||||| |||||| || || Sbjct 920764 ACAACAGGCACAGAGCCAGCCAGAAAAGCGTTGTAGAGCTTTTCTGTGATGTAATCTTTG 920823 Query 176391 TGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 || |||||||||||||| | | ||| || || || Sbjct 920824 TGGATTGAGTTTTCAAAGGAAAGATAAAATTTGCA 920858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577122991989840