Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1122 246 2e-59 seq383 131 1e-24 seq1118 109 4e-18 seq473 98.7 7e-15 seq3920 96.9 3e-14 >seq1122 Length=1361222 Score = 246 bits (272), Expect = 2e-59 Identities = 753/1149 (66%), Gaps = 30/1149 (3%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| ||||||||| || ||||||||||| | |||||| ||||||||||| Sbjct 1262895 TTATCCACAGCAGACACATTAAGGATTCCATTGGCATCAATATCAAAAGTGACTTCAATC 1262836 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA--T 281534 ||||| || || | | ||||| || || ||| | || || || ||| | || | Sbjct 1262835 TGAGGAACGCCACAGGGGGCAGGAGGAATGCCTGTGAG-TTCAACCTTGCCA-AGTAGGT 1262778 Query 281535 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 281594 | ||||| || || | | ||||| || ||| || || || ||| || | Sbjct 1262777 TGTTATCCTTGGTCATGGCATGCTCACCATCATAAACCTGAATGAGCACACCAGGCTGGT 1262718 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 281654 | || || || || || || | | | ||| ||||| || || || | | Sbjct 1262717 TGTCGGAGTAGGTGGTGAAGGTTTGCGTCTGCTTAGTGGGAATGGTGGTATTGTGCTTGA 1262658 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | ||||||| | |||||||| |||| | ||||| ||||||||||||||||| | Sbjct 1262657 TGAGGATGGTCATGACTCCACCAGCAGTTTTGATTCCAAGGGAAAGAGGAGTGACATCCA 1262598 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 ||| | | | ||||| |||||| | | ||| | ||| ||||| || | || Sbjct 1262597 ATAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGATAAAATGGCTGCCTGGACAG 1262538 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| |||||||| |||||||| || | | | ||| |||| ||| ||||||| Sbjct 1262537 CTGCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTCCCATTGA 1262478 Query 281835 AAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | ||||||| ||| | | | || ||||| | ||| ||||| || | ||| Sbjct 1262477 AGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGGTTGAGCCTCCCACCAGGACA 1262419 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || ||||| | ||| || || || ||||||| |||| | |||| || || || || Sbjct 1262418 ATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAGGAGCTTTCTCCACAGGGTCC 1262359 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | | |||| ||| | | | |||||| ||| || | |||| || | | Sbjct 1262358 AGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATCGGGCACGGGTAATAGAGGTA 1262299 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG---TCGAAGAA 282070 | | || |||||||| | | ||||||| ||||| | || | | |||| | Sbjct 1262298 TAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGACCTGGGTGCTGGAAG-A 1262240 Query 282071 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGC 282126 || ||||||| |||||||| ||||| || || | || | || | || ||| | | Sbjct 1262239 GAGAGTGCAC--TTAGCACGCTCACAAGCAGTGCAGAGGCGACGGACAGCCCTCTTGTTC 1262182 Query 282127 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACA 282184 | |||| || | || | |||| |||||| ||| ||| | | ||| | || Sbjct 1262181 TCGCTGAT----GTCCTTCTTGTGCTTTCGCTTGAACTCTGCAATAAA--ATGGTTGACG 1262128 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 | || || ||||| || || || || || | |||| ||| | |||| | | || | Sbjct 1262127 ATTCGGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTCCGGCAGTAGATTTGACATCA 1262068 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGT---AACATCATGGGTTCCACCACCCATATCA 282301 || | |||||| |||| || ||| || |||||| || |||||||||| ||| Sbjct 1262067 AAGATTCCATCCTCAATAG---TAAGGGTTGACACATCAAAAGTGCCACCACCCAAGTCA 1262011 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || ||||| |||| | |||| || | |||| |||| ||||||| Sbjct 1262010 AAGATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTAAGCCATTAGCAATAGCAGCA 1261951 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 |||||||| |||||||| ||||| | || || ||||||||||| |||| |||||||| Sbjct 1261950 GCAGTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAGCAATAGTTCCAGCATCTTTG 1261891 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || || || || || || || ||||| | || || || | | | |||| || || Sbjct 1261890 GTAGCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTGTGACATCAGCATTGGTAACA 1261831 Query 282482 TCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 282541 || |||| || || ||| |||| | ||| || | |||| || ||||| | Sbjct 1261830 GTCTTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTGTCAAAACCACGGATGACACC 1261771 Query 282542 TGTTCTGGA 282550 | |||||| Sbjct 1261770 TCCTCTGGA 1261762 >seq383 Length=851692 Score = 131 bits (144), Expect = 1e-24 Identities = 366/554 (66%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 282332 |||||| || || ||||||| |||||| || || || | || | || || | || | Sbjct 466900 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 466959 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 || | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || | Sbjct 466960 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 467017 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | ||||| ||||| |||||||| || ||||| || | || || || || ||||| | Sbjct 467018 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 467077 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512 | || || || || || |||| || || | || | | |||| || || | | Sbjct 467078 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 467137 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCATTT 282571 |||| ||| | | | ||| || || |||| || || | | | |||| | || | Sbjct 467138 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGG-GTAGAAAGCTTTTTTCTCCCCT 467196 Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631 | || || || | | || || || |||| || |||| ||| |||||| | Sbjct 467197 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 467256 Query 282632 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691 |||||||||||||| || | |||||||| | || ||||| | ||||| |||||| Sbjct 467257 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 467316 Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 || | ||| || |||||| | || | || | ||||| ||||| || || || | Sbjct 467317 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 467376 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 || || || || || | ||||| || || ||||| || || || || || || || Sbjct 467377 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 467436 Query 282812 ATTTCAACTTTACC 282825 || || || || || Sbjct 467437 ATCTCCACCTTGCC 467450 >seq1118 Length=444220 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 178448 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 178389 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||||||||| | ||||| ||||| || |||||||||||| | | |||||| | Sbjct 178388 GTGGTTGGAAGAGACAAATATGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 178329 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 178328 GAAGCTTCTCATAAA 178314 >seq473 Length=3117084 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 1840063 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 1840122 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 1840123 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 1840182 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 1840183 GCGGGTACTGTGACCACAGCAT 1840204 >seq3920 Length=2460292 Score = 96.9 bits (106), Expect = 3e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | |||||| | || ||||||| Sbjct 324882 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 324941 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 324942 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 325001 Query 131301 G 131301 | Sbjct 325002 G 325002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739975756949484