Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq340 188 6e-43 >seq340 Length=4512828 Score = 188 bits (208), Expect = 6e-43 Identities = 481/720 (67%), Gaps = 73/720 (10%) Strand=Plus/Minus Query 1070 CCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGC 1129 |||||||| || |||||||||||||||| ||||||| ||| || | | | ||||||| Sbjct 438838 CCCACAGCCCTGGCTTCTGGTCTGAAAA-GAGTAGGCATCTTCTGGGTGCCATGGAAGGC 438780 Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 |||||||||||| ||||| ||| |||||||| | || |||||||||| | |||| ||| Sbjct 438779 ATTTTAAAGAAATGGCTTGGAAGAAAAATCTCGAGGTCACTTACATAGTTATCCAAAAGC 438720 Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTG----TAT-GTCCCGTGGTA 1244 | |||||||| || || || ||||| || ||| ||| || ||| || Sbjct 438719 TCCTTAAATGAGATCTTTAACTCCTCGATTATGCCTCGTTGGTCATATGGTTCCGGCGT- 438661 Query 1245 GTGGATGG---CCGT--GGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGC 1299 || | ||| |||| || |||| || |||| ||| ||||||||| |||||||||||| Sbjct 438660 GTAGGTGGGCACCGTGCGGCAGGACAGGAAGGGTCCCAAACAGCAGAACAGGAACAGGGC 438601 Query 1300 AAGCCCTGAAGATTTTGTAAAAATAGAGTAATGC-------CCACACACCCCCACCTGCC 1352 ||| | | |||| || | | | ||| | |||| ||| || |||||||||||| Sbjct 438600 AAGTCTGGCAGATCCTGGAGAGAGAGAATGATGCTATGAAGCCAGACGCCCCCACCTGCC 438541 Query 1353 CCATACCTTAACCTGCCCAAGCTTTCACCACCGAAGCTGTGCC------GGACTGAGCCC 1406 || | ||| || |||| | | | |||| ||| || |||| ||| Sbjct 438540 CC--AGCTTGCGTCGCTTAAGC---CGCTGTTG-GGCTGAGCCACCTCTGGGCTGACCCC 438487 Query 1407 CATC-CAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTG 1465 | | ||||| |||| ||| | || || || | | ||| ||| | || ||| | Sbjct 438486 CTGCGTGGTCTTCCTCTCCATCTGGAGACACCAGA-CTCTCCCCCCA-AACCAGCGGCAG 438429 Query 1466 TAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTG 1525 ||| | | || |||||| | |||| || || || |||||||| ||| || |||| | Sbjct 438428 CAGGCCGCAGCGGTACCTGTGTGGGAGACCATGGCGGGAGAGAGAGAG---GCTGCTTCG 438372 Query 1526 GCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGC 1585 || |||||| || ||| ||||||| || || | | |||| ||||||||||||| Sbjct 438371 GCGACAGCTTCTGGAGCCCAATGTGCTGGCCATGGTCCTCGGGA--GGTATATAAAGGGC 438314 Query 1586 TAGTTGTAAGG-AGGAGCAC--TAAAAGTACCGCCCACGGTAAAGTCATTACT------- 1635 ||| | |||| || || || | | || ||||||| | | | |||||||| Sbjct 438313 CAGTCGCAAGGAAGAAGGACCATCGATGTCCCGCCCATAGCAGAATCATTACTCAGCTTT 438254 Query 1636 ----CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAG 1690 ||||||||| ||||||| || ||||| | ||||||| ||| Sbjct 438253 TCTCCAGAAAACACTTTCAAAATTCTGCCACC----------------CAAGGCTGAAAG 438210 Query 1691 GAAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG 1747 |||| ||| |||||||| ||| ||||| || |||| || | || | ||||| || Sbjct 438209 GAAACGCTGAGGTTACCCTGAAGGTGGGCCACCGCCTGACTCAGTCCAGACGCACACAGG 438150 Score = 143 bits (158), Expect = 2e-29 Identities = 244/347 (70%), Gaps = 19/347 (5%) Strand=Plus/Minus Query 417 TTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACttttttttGATAGCTG 476 |||||||| ||||||||| | ||||| | | ||||| ||| |||| | | Sbjct 440317 TTCAGGCAGTTTGAAAACTGATTTAAAATAGTCAAGATGAATCTTTTCTTTTCAAATTGA 440258 Query 477 TCTGTAGGCATAGAAATGTCTG------GTGCGCGTTGCAATTCAAGTTTTTTGAGATGG 530 |||||||||| |||||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 440257 TCTGTAGGCACAGAAATGTTTGTTTTTGGTGCACGTTGAAATTCGAGTTTGTCGAGATGT 440198 Query 531 TCCATGACATCAGTAAAACTATTTGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAA 590 || ||||| || || | | ||| || ||| | | || || ||| ||||| |||||| Sbjct 440197 TCTATGACCACATCAAGAGT--TTG-GTTATTGAGTATTGGTTGGATCGCTCTGAAATAA 440141 Query 591 GGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGG-CTGGGGGCTCA-CAGAAAAGCACT 648 |||||||||||||| |||| || || |||||| || |||||| ||| ||| || ||| Sbjct 440140 GGCAGGATGGCTGAGCTGTCGAGGTAGTGTGGGGGTCTGGGG--TCAGCAGTGAAACACG 440083 Query 649 GCATGCGGCACGTGCATGATTTTACTAATCCCTTATTCTCTTTCTGCTTCTGTGG---AA 705 |||| | || || ||| || | ||| ||||| | |||| ||| || || Sbjct 440082 GCATCTCGTACTGGCTGGATATTGGCACTCC---TTTCTCGTCCTGCAGCTGGGGAACAA 440026 Query 706 GGAGAGGAAATGGGTGAGCATTAGTGTTGTAAAGCAGTCAGAAACCC 752 |||| ||||||||| ||| | ||| ||| || ||| |||||| || Sbjct 440025 GGAGTCGAAATGGGTAAGCGTCAGTTTTGCGAAACAGCCAGAAATCC 439979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438486903012000