Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2140 152 1e-31 seq83 152 1e-31 seq2372 120 6e-22 seq591 98.7 2e-15 seq590 98.7 2e-15 >seq2140 Length=878742 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | |||||| || || || ||||| || || ||||||| Sbjct 744364 TACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 744423 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || || ||||| || || || || || |||| Sbjct 744424 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAG 744483 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || || || || || || || |||| || | Sbjct 744484 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCA 744543 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 744544 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 744592 >seq83 Length=833179 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| || || ||||| || ||||||||||| ||||| ||||| || || || ||||| Sbjct 394665 ACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 394606 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| || |||||||| | || || || ||||| || Sbjct 394605 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 394546 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || ||||| ||||| | || ||||| || || || ||| | || || || Sbjct 394545 GATGCCCTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 394486 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||| || ||||| ||||| || || ||||||||| Sbjct 394485 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 394437 >seq2372 Length=486337 Score = 120 bits (132), Expect = 6e-22 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCT---GTATATTATAATCA 82640 || |||| || ||| | ||||||||||| || || || |||| | ||||| || || Sbjct 216820 CCACCTCACAGACGACGCACTAAGTGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCT 216879 Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || ||| | | || || ||||| ||||| || |||| || || || ||||| || Sbjct 216880 GACAGAGTGCAGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGATGCTGCTGATCAGGT 216939 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || || || ||||| || || || || ||||| ||||| ||| | || ||| | || || Sbjct 216940 GGGATGCCCTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCA 216999 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 217000 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 217049 >seq591 Length=4273213 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||||||||| ||| |||||||||| |||||||| ||||||||| | || |||| Sbjct 3770910 AAGCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATG 3770851 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | || | || | ||| || | || | |||||| | |||||||| || || || || | Sbjct 3770850 GGTTGACTGCCTTTGGCCCGTGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGACCA 3770791 Query 60429 TAATGCA 60435 | |||| Sbjct 3770790 TGTTGCA 3770784 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||| || || || || || || || ||||||||||| || ||| Sbjct 3772099 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 3772040 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | |||||||||||||| | ||| |||||||| || Sbjct 3772039 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 3771980 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| | || || || || Sbjct 3771979 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 3771945 >seq590 Length=3402153 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| |||||| || ||| | |||| || || |||||||| | || ||||| || Sbjct 1072907 CCGCCTCCCAAACGAAGCACTGAATGCAAGGTGGACTCTTTCTGAACATCGTAATCTGAC 1072848 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || ||||| || | || || || || || || || || Sbjct 1072847 AGAGTACGGCCATCCTCCAGCTGTTTCCCCGTGAAAATCAGATGCTGCTGGTCAGGTGGG 1072788 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| |||| || | ||||| ||||| | | | || ||| | | || || Sbjct 1072787 ATGCCCTCCTTGTCTTAGATTGTAGCTTTGACATTCTTATTGGTGTCAGTGGACTCAACC 1072728 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| ||||| ||||| ||||| || Sbjct 1072727 TCGAGGGTGATAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGTAT 1072681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981659462800226