Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq2629 109 7e-19 seq993 105 9e-18 seq300 105 9e-18 seq83 105 9e-18 seq911 104 3e-17 seq141 104 3e-17 seq87 87.8 2e-12 >seq2629 Length=349780 Score = 109 bits (120), Expect = 7e-19 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 8647 CGATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCG 8706 ||||| | ||||||||||||||||||||| ||||| |||| ||||| | |||||||||| Sbjct 132616 CGATGGCACATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCG 132557 Query 8707 GGGTTCGATTCCCCGACGAGGAG 8729 |||||||||||||||||| |||| Sbjct 132556 GGGTTCGATTCCCCGACGGGGAG 132534 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 88801 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 88860 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 88861 CCCCGACGGGGAG 88873 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 88802 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 88861 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 88862 CCCGACGGGGAGG 88874 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 132608 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 132549 Query 11786 TTCCCCGACGAGGAG 11800 |||||||||| |||| Sbjct 132548 TTCCCCGACGGGGAG 132534 Score = 96.9 bits (106), Expect = 5e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 139348 CACAAC-TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAA 139406 |||||| ||| ||||||||| |||||||||||||||||| | |||| |||||||| | | Sbjct 88879 CACAACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCA 88820 Query 139407 CCACTATACTAACGAGGA 139424 |||||||||||||||||| Sbjct 88819 CCACTATACTAACGAGGA 88802 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 132534 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 132593 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 132594 TACTAACGAGGA 132605 >seq993 Length=1047754 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 410792 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 410851 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 410852 CCCCGACGGGGAG 410864 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 410793 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 410852 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 410853 CCCGACGGGGAG 410864 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 410864 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 410805 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 410804 TACTAACGAGGA 410793 >seq300 Length=1762873 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 232704 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 232645 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 232644 CCCCGACGGGGAG 232632 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 232703 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 232644 Query 11789 CCCGACGAGGAGGGA 11803 ||||||| |||| || Sbjct 232643 CCCGACGGGGAGAGA 232629 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 232632 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 232691 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 232692 TACTAACGAGGA 232703 >seq83 Length=833179 Score = 105 bits (116), Expect = 9e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 384638 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 384697 Query 11787 TCCCCGACGAGGAGG 11801 ||||||||| ||||| Sbjct 384698 TCCCCGACGGGGAGG 384712 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 377740 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 377799 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 377800 CCCCGACGGGGAGG 377813 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 377741 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 377800 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 377801 CCCGACGGGGAG 377812 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 384637 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 384696 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 384697 TTCCCCGACGGGGAG 384711 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 377812 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 377753 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 377752 TACTAACGAGGA 377741 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 384711 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 384652 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 384651 TACTAACGAGGA 384640 >seq911 Length=2223234 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1213248 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1213307 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1213308 CCCGACGGGGAG 1213319 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1213248 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1213307 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1213308 CCCGACGGGGAG 1213319 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 1213319 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1213260 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1213259 TACTAACGAGGA 1213248 >seq141 Length=920444 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 920036 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 919977 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 919976 CCCCGACGGGGAGG 919963 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 920035 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 919976 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 919975 CCCGACGGGGAG 919964 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 919964 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 920023 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 920024 TACTAACGAGGA 920035 >seq87 Length=1222039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| ||||||||||||||||| | ||||| ||| |||| | ||||||| Sbjct 1183895 CTCCCCGTCGGGGAAGCGAACCCCGGTCTCCCGCGTGACAAGCGGAGATACTTACCACTA 1183954 Query 139413 TACTAACGAGG 139423 ||||||||||| Sbjct 1183955 TACTAACGAGG 1183965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8659 CCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 8718 |||||||||||||||||| ||||| ||| |||| | ||||||||||||||||| |||| Sbjct 1183965 CCTCGTTAGTATAGTGGTAAGTATCTCCGCTTGTCACGCGGGAGACCGGGGTTCGCTTCC 1183906 Query 8719 CCGACGAGGAG 8729 |||||| |||| Sbjct 1183905 CCGACGGGGAG 1183895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 11731 CCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 11789 ||||||||||||||||||| |||| ||| |||| | ||||||||||||||||| |||| Sbjct 1183965 CCTCGTTAGTATAGTGGTAAGTATCTCCGCTTGTCACGCGGGAGACCGGGGTTCGCTTCC 1183906 Query 11790 CCGACGAGGAG 11800 |||||| |||| Sbjct 1183905 CCGACGGGGAG 1183895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652735987092960