Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1143 300 2e-76 seq157 197 2e-45 seq598 82.4 9e-11 >seq1143 Length=4558397 Score = 300 bits (332), Expect = 2e-76 Identities = 676/1005 (67%), Gaps = 17/1005 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| |||||| | |||||||| || || | |||| || Sbjct 3348151 CCAGGGCTTTATGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTG 3348210 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||||||| ||| || | || |||| || | || || | Sbjct 3348211 TGTCAAACTTATTGGCAAACAGGTGGTGCACGTGCAGCA---TCCAGTTCAAGTCACCGG 3348267 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || || || || |||||||| | ||||||||||||||| || |||| || | Sbjct 3348268 CTCCGAAAACACATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCT 3348327 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| ||||||||||| ||||| | |||| |||||||| | Sbjct 3348328 TGGAAACATCACCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTG 3348387 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||||||||| | ||| | || || | || || || | |||| ||||| | | Sbjct 3348388 ACATGTCGTACTTAGA-ACTTAAGGACAGTGAGCCTGGGACTTCAGGCATCCTCTGAATA 3348446 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | |||||||| || || || || || | ||||||||| |||| | | Sbjct 3348447 GTGGCCCAGAGATACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCTGG 3348506 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | || | || || || ||| | || | ||| || ||||| Sbjct 3348507 ATTTTTTCATTCTCAAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCGCTG 3348566 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| || | | |||||| | |||||| ||| |||| | | Sbjct 3348567 CCTGAAAACAGCGGCGTTTCAAGAGGAGGATGTATTTTGTCAGTCCCCATGTTTGTCAGC 3348626 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || ||||| ||| | ||| ||||||| | | ||| || | | Sbjct 3348627 TTTCCAT-TA--ACCAC-TGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCAT 3348682 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | ||||| ||||| |||| ||| || | ||| |||| | || || || || Sbjct 3348683 TTTCTCGGTTTCTAGGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAG 3348742 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | || Sbjct 3348743 GTTGGTTTTAATCGGAAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCACT 3348802 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | | ||| || ||||| | ||||| | || ||||| || || |||||||| || || Sbjct 3348803 CATTTTGTAGAGGTCCTGCATGCAGTTGATGTCAGCCTGAACCCGGCTCCACGAGGCATA 3348862 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| || ||||||| |||| ||||| || || |||||| || | || || || Sbjct 3348863 CACCACACTCTCCAGTTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAAT 3348922 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||| | ||| | || || || | ||| | || ||||| | |||||| | |||| Sbjct 3348923 CACTG-CAGCCAAAAAGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTC 3348980 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || |||| ||| || || || || || ||||| Sbjct 3348981 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCGAGCATTTCGATTTTGTGATGAACCACT 3349040 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 |||||||| ||||| || ||||| ||||| || ||| || | || || ||| ||| Sbjct 3349041 ATAGAATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTG 3349100 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 || | | | | || || ||||| || |||||||| |||||| Sbjct 3349101 CGCTTCTTGATGAAAGCAGCACAATCACTGGTCATGTTGACGTAG 3349145 >seq157 Length=3278046 Score = 197 bits (218), Expect = 2e-45 Identities = 237/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || || || ||||| ||||| || | | Sbjct 3275896 CAGAGAGGGTGAGGCAGGCTACTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 3275955 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || || ||||||| |||||| ||||| || || | || || || ||| Sbjct 3275956 ACTTGTAACACCCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 3276015 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| ||||| || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 3276016 GTCCCAGTTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 3276075 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 3276076 TCTCGCTGAAGGTGATCATGTTTTCCGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 3276135 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||||| | |||| |||||||| |||||||| ||||||||||||| | Sbjct 3276136 TCAAGACTTCTTGGGGATTTTGCAGAGAGCAGCTTAAAGAGGCAGGTGTGTTCAGCGGCT 3276195 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 3276196 CTCTTACATCCTGGGTCACCAC 3276217 Score = 114 bits (126), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || |||| ||| || || |||||||||| || | || | ||| |||||||||| Sbjct 3273297 ACCGTTTCCCTGTAGTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGATCACCTCCT-- 3273354 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| || || || ||||| || |||||||| ||||| Sbjct 3273355 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGATGTTGTCCCA 3273413 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | |||||| || || || || || || | || ||||| Sbjct 3273414 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAATCCCCGACCCAGAGACCTTCCAG 3273470 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| ||||| | |||| | ||||||||||| || |||| Sbjct 3273471 GAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 3273516 >seq598 Length=2579464 Score = 82.4 bits (90), Expect = 9e-11 Identities = 222/335 (66%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || |||||| || | | |||||| Sbjct 700766 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCGCAGGTGTTCAGTAAGTATTTC 700707 Query 162703 CACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACT 162761 ||| || | | |||| | || || | | ||||||||| || ||||| || | Sbjct 700706 CACGGCAC-CGGGCTCCGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGGA 700648 Query 162762 CCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGA 162821 ||| || || || || || | |||| || |||| | |||||||| ||| || || Sbjct 700647 CCAGGAGGCATAAACCACCCGAACCAATTTACTGGCCATGAAGACATTCGGGAAGCATGA 700588 Query 162822 AACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTACG 162879 || || || | || ||| | ||| | | || | ||| |||||| || || Sbjct 700587 AATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCTACATGGACA 700530 Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939 ||||||| ||||||||||| || | || | ||| | || || || | || | ||| Sbjct 700529 CAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCTTTCAAAGTTTTCAACCTTC 700470 Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || ||||| || || Sbjct 700469 TCATGGACCACCATAGAGTAAGCGATGGGAAAGTC 700435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578335589846400