Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq738 333 3e-86 seq157 293 3e-74 seq3311 185 1e-41 seq597 172 6e-38 seq140 129 7e-25 seq3852 127 2e-24 seq3769 86.0 7e-12 seq1184 86.0 7e-12 >seq738 Length=1970462 Score = 333 bits (368), Expect = 3e-86 Identities = 502/705 (71%), Gaps = 9/705 (1%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || |||||||| ||||| || | || | | | ||||| |||||||| ||||| | Sbjct 1173189 ATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTG 1173130 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || || ||||| | ||| || || |||| ||||| |||| ||| || ||||| ||||| Sbjct 1173129 TGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCT 1173070 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || | ||| || | ||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct 1173069 GTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCC 1173010 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 ||||||||||| || |||| || ||||||||||| || ||||| |||| ||||||| Sbjct 1173009 AGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAG 1172950 Query 147112 AACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGGCAGGTCCGCGGGGTTCCA 147170 |||||||| ||| ||||| || || || ||| || ||||| |||| || ||||| Sbjct 1172949 AACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTGAGCGGG-AGGTGTTTTGGATTCCA 1172891 Query 147171 GGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCT 147230 ||| | | | | | ||| | ||||| | || || || | ||| | Sbjct 1172890 GGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTG 1172831 Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTG-TCCCGCAGTCCACGTACCTGGCCCCAA 147289 ||| ||||| || || | ||| || | || ||| | || |||| |||||||| Sbjct 1172830 CAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTA-TCTTCGTATTCGGCCCCAA 1172772 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 | ||||||||||| |||| ||| ||||| || || || || | |||| ||||| | Sbjct 1172771 AATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATCTCC---TTCTCTGGTGGAGAATC 1172715 Query 147350 CC-GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCG 147408 || | | | ||| | | ||||||| | |||||||||||| ||||||||||| Sbjct 1172714 CCAGGCTGTCCAAGACGC-CTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAA 1172656 Query 147409 GAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCC 147468 || |||||||||| || ||||| ||| ||| ||||| |||| ||||||||||| ||| Sbjct 1172655 GACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCC 1172596 Query 147469 CTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCC 147528 |||| || || | ||||| || ||||| || || | || || || || | |||| Sbjct 1172595 TTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCC 1172536 Query 147529 TGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 || || ||||| ||||| ||||| |||||||| | ||| ||| Sbjct 1172535 TGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCGTCC 1172491 >seq157 Length=3278046 Score = 293 bits (324), Expect = 3e-74 Identities = 257/320 (80%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | || ||||||||| || ||||| | | ||||| ||| Sbjct 3276217 GTGGTGACCCAGGATGTAAGAGAGCCGCTGAACACACCTGCCTCTTTAAGCTGCTCTCTG 3276158 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | || || || ||||||| || ||||| ||||||||| | | || || Sbjct 3276157 CAAAATCCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCGGAA 3276098 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || || ||| | |||| ||||| || |||||||| || |||||||||||| Sbjct 3276097 AACATGATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAG 3276038 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||||||| || |||||| ||||||||||| || || |||||||||||||| Sbjct 3276037 ATAAACATCACCCAACTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 3275978 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| ||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 3275977 GAGGATGAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGA 3275918 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || ||||||||||||||||| Sbjct 3275917 GTAGCCTGCCTCACCCTCTC 3275898 Score = 212 bits (234), Expect = 7e-50 Identities = 216/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || || || || || ||||| | ||| |||||||| || |||| Sbjct 3273567 TCCCAGTACAGCCCACAGTTTTCCTTCACTACAAATTCTCTGAAGACCACCTAAATATCA 3273508 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||| ||||| | ||| ||| | |||||| | || ||||| | | Sbjct 3273507 CTTGCTCTGCCAATGCTCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCGGGGA 3273448 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| ||||||| ||| |||| || || | ||||| || || ||||| ||||| | | Sbjct 3273447 TTGAGAACAGTACTGAGATTCTCTCACACCCCAATGGGACAACATCTGTCACCAGCATCC 3273388 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| |||||||| ||| | ||| Sbjct 3273387 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGTACC 3273328 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| || |||| |||||||| || | ||| |||| Sbjct 3273327 TGGGGACTGTGACCAACTACAGGGAAACGGTGAACAAAGGTA 3273286 >seq3311 Length=707574 Score = 185 bits (204), Expect = 1e-41 Identities = 145/172 (84%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| ||||||||||| |||||||| Sbjct 355814 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 355755 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||||||||||| || ||||| |||| Sbjct 355754 GGGCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTT 355695 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGG 147152 ||||||| |||||||| ||| |||||| ||||| || |||||| ||||| Sbjct 355694 CACCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGG 355643 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341 ||||||||| |||||||| || |||||||| || || || || || || | |||| Sbjct 352565 GGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCTCTGGT 352506 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | | || || ||||||| | |||||||||||| |||||| Sbjct 352505 GGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTCACTCC 352446 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 ||||| || |||||||||| || ||||| ||| ||| || Sbjct 352445 CTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTGGAGGA 352405 >seq597 Length=4151674 Score = 172 bits (190), Expect = 6e-38 Identities = 137/167 (82%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 1785524 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 1785583 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| ||||||||||| |||| Sbjct 1785584 TGCCGCAGGCGGAGAACCAC------------GGCCCTGACATCAAGGAGCATGTGAACT 1785631 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| ||| |||||||||| || ||| Sbjct 1785632 CCCTGGGGGAGAAGCTGAAGACCCTCAGACTGAGGCTGCGTCGCTGT 1785678 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| ||||| || |||||||| ||||||||||| || || ||||| ||||||| Sbjct 1787847 AGCTCCAAGAGAAGGGGGTCTACAAAGCCATGAGTGAGTTCGACATCTTTATCAACTACA 1787906 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| |||||||||| || |||| Sbjct 1787907 TAGAAGCCTACATGACAATGAAGATGA 1787933 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||| Sbjct 1785211 CAAATGAAGGACCAGCTGGACAACATGCTGTTGACCAGGTCCCTGCTGGAGGACTTTAAG 1785270 Query 178233 G 178233 | Sbjct 1785271 G 1785271 >seq140 Length=1415785 Score = 129 bits (142), Expect = 7e-25 Identities = 534/837 (64%), Gaps = 48/837 (6%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||| | |||| || | ||||| | ||||| | | |||| | Sbjct 1308103 GTACTCCTTGGTGTTCGGGGTTGGCCTGCTGGGCAACGTGGTGGTGCTGATGATCCTTAC 1308162 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| |||||||||||||||| |||| ||||||||||| || ||| Sbjct 1308163 AAAATACAAGAGGCTCCACATCATGACCAACATCTACCTGCTCAACCTGGCCGTTTCTGA 1308222 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | |||| || || || |||||||||| | | ||| |||| |||| Sbjct 1308223 CCTGCTTGTCCTGCTCACGCTGCCGTTCTGGATTCACTAC--ATTGGGTGGAAAGAGTGG 1308280 Query 8790 G---TGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846 | | || ||| | |||||||||| | | || |||| || ||| | Sbjct 1308281 GCTTTTGGCCGCTG-------CATGTGTAAGCTGCTCTCTGGGCTTTATCACATGGGCTT 1308333 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTA 8906 |||||| || || | || ||||||||| | || | ||| ||||||| || | || | Sbjct 1308334 GTACAGTGAGATCTTCTTCATCATCCTGCTCACCATAGACCGGTATCTGGCCATCGTCCA 1308393 Query 8907 CGCGGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGC 8966 ||| ||| | | || | ||| ||| | | || ||| || |||| | | | Sbjct 1308394 CGCTGTGTTTGCCCTGCGAGCCCGGACGGTCACTTTTGGTATCGTCACCAGTGCCTTCAC 1308453 Query 8967 CTGGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGC 9026 |||| ||||| | | | | | |||| || || |||||||| |||| ||| | | | Sbjct 1308454 CTGGGGACTGGCAGGGCTAGCAGCCATCCCTGACTTTATCTTCCATGAGTCCCAGGAGGA 1308513 Query 9027 CACAGGCAAGGGGGTCTGCCAAGCCT-----CCTACA--------CAGACTTTTGGAAGG 9073 |||||| ||||| || ||| || ||| ||| |||||| Sbjct 1308514 GTTTGGCAAGTCTGTCTG-TAATCCTCTTTACCCACAGGGTAGAGAAGATGCCTGGAAGA 1308572 Query 9074 GGGTTGATGTTACCAGCATGACCAT----GGTCACCCTCATCCTGCCTTTGCTTATCATG 9129 | | | | | || |||| || |||| | || |||||| ||||| | ||| Sbjct 1308573 GTTTCCAAGCTCTGAGGATGAATATCTTGGGTCTCGCT----CTGCCTCTGCTTGTTATG 1308628 Query 9130 GCCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAA 9188 || ||||||||| |||||| || || || | | |||| ||| | ||| Sbjct 1308629 GCTGTCTGCTACTCAGGAATCATTAAAACGCTGCTGAGATGCCC----CAGTAAAAAAAA 1308684 Query 9189 CCTGCACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCC 9248 | ||| || ||||||||| |||| ||||| | | || | || |||| || Sbjct 1308685 ATATAAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTCTTCATTTTCTGGACACC 1308744 Query 9249 CTACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGA 9308 ||||||| | | ||| || | | | ||| | | |||| | | |||||||| Sbjct 1308745 CTACAACCTGGTTCTCCTTCTCTCTGCTTTTCAAATG---AACTTTGAGACCGACTGTGA 1308801 Query 9309 AGCGCGGCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCA 9365 || | |||| | |||| ||||| | ||||| | ||| |||| ||| | | || Sbjct 1308802 ---GCAGAGCAGACAGCTGGATCTGGCCATGCTGGTGACGGAGGTGATTGCCCACTCGCA 1308858 Query 9366 CTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 |||||| |||||||| || || ||||| || || || || | |||||| || |||| Sbjct 1308859 CTGCTGTGTCAACCCTGTGATTTACGCCTTCGTCGGTGAGAGGTTCCAGAAGCACCT 1308915 >seq3852 Length=1634 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| || |||||||| ||| ||| ||||||| ||||| Sbjct 1397 GTACTCCCTGGTATTTGTCATTGGCCTGATTGGCAACATCCTAGTGGTCCTAGTTCTCAT 1338 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 1337 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 1278 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||| | | | ||||| || ||||| |||||| ||| Sbjct 1277 CCTGATCTTCCTCTTCACACTGCCCTTCTGGATTGACT 1240 >seq3769 Length=73658 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||| ||| ||||||| || |||| ||| | ||||| | || || || | Sbjct 41485 TACTCCTTGGTCTTTCTGTTTGGCCTGCTTGGAAATTCTGTGGTGGTTCTGGTTCTGTTC 41544 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 ||||||||| |||||| | ||||||| || | | |||| ||||||||||| | ||| Sbjct 41545 AAGTACAAGCGGCTCAAGTCCATGACCGACGTGTACCTGCTCAACCTGGCCATCTCGGAC 41604 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | || | |||||||| ||| Sbjct 41605 CTGCTCTTCGTGCTCTCGCTCCCCTTCTGG 41634 >seq1184 Length=1340168 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||| ||| ||||||| || |||| ||| | ||||| | || || || | Sbjct 832782 TACTCCTTGGTCTTTCTGTTTGGCCTGCTTGGAAATTCTGTGGTGGTTCTGGTTCTGTTC 832723 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 ||||||||| |||||| | ||||||| || | | |||| ||||||||||| | ||| Sbjct 832722 AAGTACAAGCGGCTCAAGTCCATGACCGACGTGTACCTGCTCAACCTGGCCATCTCGGAC 832663 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | || | |||||||| ||| Sbjct 832662 CTGCTCTTCGTGCTCTCGCTCCCCTTCTGG 832633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583390747137600