Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq738 163 2e-35 seq1450 116 3e-21 seq1615 111 1e-19 seq1884 86.0 5e-12 >seq738 Length=1970462 Score = 163 bits (180), Expect = 2e-35 Identities = 282/410 (69%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 ||||| ||||| || || || || | ||||||| | | |||||||| || |||| || Sbjct 1172729 GAAGGAGATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATACGAA 1172788 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 || | | || |||||| | |||||| | || ||| | ||| || | || || Sbjct 1172789 GATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGACACA 1172848 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 || ||| || | || || | || | || || |||| || ||||| |||| || | Sbjct 1172849 ATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACACCTC 1172908 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102 | | | ||| | ||||| || ||| | || ||||| ||||| || ||||| Sbjct 1172909 CCGCTCACGGCCCTCCCACCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAG 1172968 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 ||||| || || ||||| | | ||||| |||||||| || || || || || ||||| Sbjct 1172969 CTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATC 1173028 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || || || |||||||||| || |||||||||||| | || | || || ||||| Sbjct 1173029 GCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGAC 1173088 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 |||| ||||| || ||||||| ||| |||||| | ||||||| ||||| Sbjct 1173089 CTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCC 1173138 >seq1450 Length=2474494 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 47216 GTGTTGCAATTTTT-AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGA 47274 ||| |||| ||||| |||| | || | || | || ||| | ||||||| || || || Sbjct 1892935 GTGCTGCAGTTTTTTAGGATTGCATAAGGAAACTGGTAAATTGGTATTTCTTGGATTGGA 1892994 Query 47275 CAATGCAGGAAAAACGGCATTACTCCACATGCTCAAAT-ACAATTGCATGAAAGAGCATA 47333 |||||||||||||| ||||||| |||||||| | || ||| | | | | ||| Sbjct 1892995 TAATGCAGGAAAAACAACATTACTACACATGCTAAGATGACA---GACTTGGACAACATG 1893051 Query 47334 ACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACAT 47393 ||| || |||||||| || || ||| |||| || ||||| |||||||| |||| || | Sbjct 1893052 TCCCAACGTTACATCCCACTTCAGAAGAACTGACCATTGCCGGCATAACCTTTACAACTT 1893111 Query 47394 TTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATG 47447 ||||| | || | || |||||| || ||| ||||| |||| || ||| || Sbjct 1893112 TTGATCTGGGTAGGCATGCTCAAGCTCGAAGAGTGTGGAAAAACTACCTTCCTG 1893165 >seq1615 Length=6207710 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| ||||||| || ||||| ||||| || |||||||| Sbjct 3957701 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 3957759 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 3957760 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACCTACATTAAAGAT 3957817 >seq1884 Length=2638154 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 1835475 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 1835416 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 1835415 AACGAGTTTCAGAGTATCAGCG 1835394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397391410170670