Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq738 145 6e-30 seq3311 84.2 2e-11 >seq738 Length=1970462 Score = 145 bits (160), Expect = 6e-30 Identities = 484/740 (65%), Gaps = 26/740 (4%) Strand=Plus/Minus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 ||| ||| | ||||| || |||| |||||||| | || || |||| | |||||| Sbjct 1173287 AAACAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGC-CTTCAATCTGAAAGTCT 1173229 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||||| || | ||| | ||||| |||| ||||| || || || || || Sbjct 1173228 TCAGCCTTGAAGCCATCAGTTTTCTCAACTTTTCGAAGCATTTTGAGCTTCGGGAAAGGC 1173169 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | || | ||| | |||||| | || | |||| ||||||| | |||| || ||| Sbjct 1173168 CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCA 1173109 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | || | | || | |||| || || |||||||||||||||||||| Sbjct 1173108 TCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAG 1173049 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 ||||| ||| ||| || || ||||| || ||||| || |||||||| ||||| || | Sbjct 1173048 GTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGC 1172989 Query 111862 TGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAA 111921 | ||| ||||| || || || | | | ||| || || || ||||| |||| || Sbjct 1172988 TCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAG 1172929 Query 111922 GGAGGCAATGCCAT----CCCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCT 111977 || || | ||| | | | || | ||| ||||||||||| || ||||| Sbjct 1172928 GGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGAT-TCCAGGCACACATGATGATTCTTCT 1172870 Query 111978 G-CTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTAC 112036 | | ||| | | | || | ||| || | || ||| || ||||||| ||||| | Sbjct 1172869 GTCATTAGGGTTGGTTTTGATTGT-GTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGC 1172811 Query 112037 CAGTATAATCCGCCTGACATCCAGT------GTATGTTGCCCCATAGTGTCTCCATTGGA 112090 | | ||||| |||| |||| || |||| |||||| | || ||||| || | Sbjct 1172810 CTGAATAAT----CTGA-ATCC-GTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAA 1172757 Query 112091 ATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGA-AATTGCTCTCTATTCAAC 112149 | | || | || || |||||||| || | |||| ||| | || | ||| Sbjct 1172756 AGCGGTATACTGGGCCTAGATCTCC---TTCTCT-GGTGGAGAATCCCAGGCTGTCCAAG 1172701 Query 112150 AAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCA 112209 | | | || | | ||| || |||||||| || || || | ||| | || Sbjct 1172700 ACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCG 1172641 Query 112210 TTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTT 112269 ||||||||||| | |||||||| |||||||| |||| ||| || |||||| | || | | Sbjct 1172640 TTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGT 1172581 Query 112270 TTAGTAGTTAGCAGTGGaaa 112289 || || || ||||||||||| Sbjct 1172580 TTGGTTGTGAGCAGTGGAAA 1172561 >seq3311 Length=707574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || ||| || || ||||| || ||||| Sbjct 355807 CCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACG 355748 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 || |||||||| |||||||| | || || ||||| || || || Sbjct 355747 CCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAG 355704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391881905655442