Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8397 150 2e-31 seq2372 143 3e-29 seq2140 140 4e-28 seq590 131 2e-25 seq83 123 3e-23 seq1453 114 1e-20 seq877 98.7 1e-15 seq1118 86.0 7e-12 >seq8397 Length=2660 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||| ||||| || | |||||||| || || |||||||||||| | || Sbjct 1961 ATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 2020 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || |||||||| || ||||||||||| || || || |||||| Sbjct 2021 GACACCACTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 2080 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| |||||||| | || || || ||||||| ||| || | | ||||||| ||| Sbjct 2081 CAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTCCATCAGACTACAAT 2140 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || || ||||| || || Sbjct 2141 ATTCAGAAAGAGTCCACCCTGCA 2163 >seq2372 Length=486337 Score = 143 bits (158), Expect = 3e-29 Identities = 170/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 217049 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 216990 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || |||||||| |||||||||||||| || || || || ||| Sbjct 216989 GACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCAG 216930 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT---AT 27582 |||| ||| ||||||| || || || || ||||||| | || || |||||| || Sbjct 216929 CAGCATCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCTGTCAGACTACAAT 216870 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | | || ||||| ||||| || || |||| ||||| | ||||| Sbjct 216869 ATTCTTCAGAAGGAGTCCACCCTGCACTTAGTGCGTCGTCTGTGAGGTGG 216820 >seq2140 Length=878742 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 744364 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 744305 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || ||||| |||||||| || ||||| |||||| Sbjct 744304 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 744245 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || || || | || || || Sbjct 744244 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 744185 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || ||| | ||||| | ||||| Sbjct 744184 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 744138 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 744592 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 744533 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || ||||| |||||| Sbjct 744532 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 744473 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || || || | || || || Sbjct 744472 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 744413 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| ||||||| | ||||| Sbjct 744412 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 744366 >seq590 Length=3402153 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || |||||||| ||||| || || ||||||||||| || || ||||||||||| | Sbjct 1072681 ATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACT 1072740 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || |||| ||| | ||||||||||| || || || |||||| Sbjct 1072741 GACACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACCAG 1072800 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| ||||| | || || || || ||||||| ||||| || |||| || || Sbjct 1072801 CAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACGAT 1072860 Query 27586 GTCCAAAAGGAATCCAC 27602 || || || || ||||| Sbjct 1072861 GTTCAGAAAGAGTCCAC 1072877 >seq83 Length=833179 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | | Sbjct 394437 AATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 394496 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | |||| || || || || || ||||| || || |||||||| Sbjct 394497 TGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCA 394556 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 394557 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 394616 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| |||||||||||||| || | ||| |||| Sbjct 394617 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCG 394652 >seq1453 Length=212010 Score = 114 bits (126), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||| | || || || | ||||||| | || Sbjct 154032 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGGCCATCACCCTCG-GGTTGAGCCCAGT 153974 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || ||||||| || ||||||||||| || || || |||||| Sbjct 153973 GACACCACTGAGAATGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCGCCTGACCAG 153914 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 |||| ||| |||||||| || || || || ||||| Sbjct 153913 CAGCATCTGATTTTTGCAGGCAAACAGCTGGAGGA 153879 >seq877 Length=764681 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 524578 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 524519 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || |||||||| || ||||||||||| Sbjct 524518 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGG 524475 >seq1118 Length=444220 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 174655 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 174596 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 174595 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 174536 Query 32245 TTCAC 32249 ||||| Sbjct 174535 TTCAC 174531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570215343514080