Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1143 132 6e-26 >seq1143 Length=4558397 Score = 132 bits (146), Expect = 6e-26 Identities = 585/919 (64%), Gaps = 19/919 (2%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| ||||| ||| || Sbjct 3349072 GAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATCGAAATGCTC 3349013 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| || ||||| |||||||| | ||||||||| Sbjct 3349012 GACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCACGTGGACAAA 3348953 Query 13803 AAGTCCGGCGACGAGTTCATCCGGG--GC-GTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 || |||| | || | | | || || || | ||| || || ||| |||| Sbjct 3348952 AAATCCG---AGGAATCCTTTTTGGCTGCAGTGATTGGCATTGCGTCTTGTTTCAGTAAC 3348896 Query 13860 GTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCC 13919 || ||||| | ||| | |||||||| | ||| ||||| || || ||||| Sbjct 3348895 GTTTTTGTGGCCAGGCAACTGGAGAGTGTGGTGTATGCCTCGTGGAGCCGGGTTCAGGCT 3348836 Query 13920 GACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAAC 13979 ||| ||| ||||||| |||||| || | | |||| |||| || |||| Sbjct 3348835 GACATCAACTGCATGCAGGACCTCTACAAAATGAGTGCGGACTGGAAGTACTTGATCAAT 3348776 Query 13980 CTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCC 14039 || ||||| ||||| || ||| | || ||||||||||| || || || ||| ||| | Sbjct 3348775 CTCTGCGGTATGGATTTTCCGATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAGTCG 3348716 Query 14040 CTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACCGCATC 14099 | ||| ||||| ||| || | |||| |||||| ||| || | | Sbjct 3348715 TTAATGGGCGAGAACAACCTAGAAACCGAGAAAATGCCCGCCCATAAAAAAGAAAGGT-- 3348658 Query 14100 AGGAAGAGGCACGTGGTGGCCAGCGGC----GGCGTGGTGGTCAACACCGGCAGGAACAA 14155 |||| | |||| | ||| || || | || |||| || | |||| Sbjct 3348657 -GGAAAAAGCAC----TATACAGTGGTTAATGGAAAGCTGACAAACATGGGGACTGACAA 3348603 Query 14156 GGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCG 14215 | || || || | || | ||| | || | ||| || |||| ||||| | Sbjct 3348602 AATACATCCTCCTCTTGAAACGCCGCTGTTTTCAGGCAGCGCCTATTTTGTGGTCAGTAG 3348543 Query 14216 GGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGA 14275 | ||| |||| || || || || | || | | | ||| | ||| | Sbjct 3348542 GAAGTATGTGGGCTATGTGCTTGAGAATGAAAAAATCCAGAAGTTTATGGAGTGGGCAAA 3348483 Query 14276 GGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCC 14335 || || |||||||| |||||| | || |||||||| | ||||| ||| | | | || Sbjct 3348482 AGATACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAGGATGC-CTGAAGTCC 3348424 Query 14336 CGGGGGGATCCCCGTTCACGTC-AAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | | || | || |||||||||| || |||||| | | | ||||| Sbjct 3348423 CAGGCTCACTGTCCTTAAGTTCTAAGTACGACATGTCAGACATGCACTCTATTGCCAGGT 3348364 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | || |||||||| |||| || || ||| | || || |||| |||||||| ||| Sbjct 3348363 TTGTTAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGCCCCCTACCCGCCGTGCA 3348304 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGA 14514 |||||||||||| | | | | || | ||||| |||| ||| |||| ||| || | Sbjct 3348303 GCGGCATCCACGTGCGCTCTGTATGTGTTTTCGGAGCCGGTGACTTGAACTGGATGCTGC 3348244 Query 14515 GCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGCT 14574 ||| | |||||||| ||||| ||||| ||| || | ||| || ||| | | | Sbjct 3348243 ACGTGCACCACCTGTTTGCCAATAAGTTTGACACAGACATAGACTTCTTTGCCATCCAGT 3348184 Query 14575 GTCTGGACGAGGACGTGCG 14593 || |||||||| | |||| Sbjct 3348183 GTTTGGACGAGCATCTGCG 3348165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658629404643840