Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq738 324 1e-83 seq3311 152 4e-32 seq1450 104 2e-17 seq916 82.4 6e-11 >seq738 Length=1970462 Score = 324 bits (358), Expect = 1e-83 Identities = 485/687 (71%), Gaps = 4/687 (1%) Strand=Plus/Minus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 |||||||| || || || | | ||||| | ||||| || || || || |||||| Sbjct 1173177 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 1173119 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 | ||| || ||||||| |||| |||| || || || | || || |||| ||| || Sbjct 1173118 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 1173059 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 |||||||| ||||| |||||||||||||||||||| ||||| || || || |||||||| Sbjct 1173058 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 1172999 Query 30019 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30078 || |||| || || ||||| || || ||||| |||| |||||| ||||| || | Sbjct 1172998 TCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAG 1172939 Query 30079 GGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30138 ||| ||||| || || || ||| |||| | || ||| || |||||||| |||| ||| Sbjct 1172938 GGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGAT 1172879 Query 30139 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30198 ||| | ||||| | |||||| | |||| ||| | || ||||| || || || Sbjct 1172878 GATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTAC 1172819 Query 30199 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30258 || | || || || |||| | | || ||| || || || |||||||||||||| Sbjct 1172818 TCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTG 1172759 Query 30259 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30318 || | ||| || || || || |||| |||| ||| ||| ||| ||||||| Sbjct 1172758 AAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCAA 1172702 Query 30319 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGA 30378 | | ||| ||| || |||||||||||||| || || ||||| ||| ||||| || | Sbjct 1172701 GACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGC 1172642 Query 30379 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30438 ||||||||| || ||| |||||||||| ||||||| || ||||||| || || | Sbjct 1172641 GTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACG 1172582 Query 30439 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACAC 30498 ||||| ||||| || ||||| | | |||||| ||| | ||||| || ||||| Sbjct 1172581 TTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACAC 1172522 Query 30499 GGACAAGACTCCCGTGCCCGTCCTGTC 30525 |||| | || |||||||| | ||| Sbjct 1172521 CGACAGGGTGCCGGTGCCCGTGCGGTC 1172495 >seq3311 Length=707574 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||| Sbjct 355810 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 355751 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||||| |||||| ||||| || || ||||| |||| | Sbjct 355750 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 355691 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||||||||| || || || |||||||| Sbjct 355690 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 355647 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||| || || ||||| ||||| || || || Sbjct 352580 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 352521 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| ||||| ||| ||| ||| ||||||| ||||||| ||| || |||||||| Sbjct 352520 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 352461 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | ||||||||| || Sbjct 352460 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 352413 >seq1450 Length=2474494 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTC-TC 110437 ||||||||| || || || || | || || ||||| |||| || || ||||| | Sbjct 2026435 ATGAGCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTT 2026376 Query 110438 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 110497 | | ||||| |||||| || || ||||||||||| ||||||||||| || ||||||| | Sbjct 2026375 TTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAAT 2026316 Query 110498 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 110557 |||| || ||| |||||||| | | ||||| | || | ||||| || || | Sbjct 2026315 TCTGTTTACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCC 2026256 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 110612 ||| || ||||| |||| || | ||| || ||||| |||||| ||||| Sbjct 2026255 TGAGT------GGGTGCCAGTGCAGGTCCCTGTTCTTGCCGATACCCATGTTCTGG 2026206 >seq916 Length=3817935 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| || | || || ||||| | | ||||| |||||| || || Sbjct 3325778 TTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 3325837 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| |||||||||||||| ||||||| || || || ||| Sbjct 3325838 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGTTTACCT 3325885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406244371258728