Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq738 416 3e-111 seq3311 165 7e-36 seq607 134 1e-26 >seq738 Length=1970462 Score = 416 bits (460), Expect = 3e-111 Identities = 556/771 (72%), Gaps = 3/771 (0%) Strand=Plus/Plus Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGG 34147 ||||| |||||| |||||| || ||| | | |||||| | |||| |||| Sbjct 1172429 CCGCACGGGGAGCTGCAGTACTTGGGGCAGATTAAGTACATCCTCCGCTGCGGCTCCCGG 1172488 Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207 |||| ||||| || || || || ||||| || |||||||||| ||||| || |||| | Sbjct 1172489 AAGGACGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGC 1172548 Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | | |||||||| ||||| || || |||||||| | ||||||||| || | ||| Sbjct 1172549 CTCAGAGATGAATTTCCACTGCTCACAACCAAACGTGTTTTCTGGAAGGGTGTTTTGGAG 1172608 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || |||||||||| | | ||| |||| ||| | |||||||| || ||| ||| ||| Sbjct 1172609 GAATTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTG 1172668 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 || ||||||||||| | ||||| |||| | | |||||| | ||| ||| | | | Sbjct 1172669 AAAATCTGGGACGCCAATGGGTCCCGAGGCGTCTTGGACAGCCTGGGATTCTC--CACCA 1172726 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||| ||| || | ||||| || ||| | || |||||||| || |||||||| || || Sbjct 1172727 GAGAAGGA-GATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATAC 1172785 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 | | || | || ||||| || | |||| ||||| |||||| | |||| ||| Sbjct 1172786 GAAGATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGAC 1172845 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 || | || |||||| |||||||||| ||| | ||||| || ||||| || || | Sbjct 1172846 ACAATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACAC 1172905 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627 ||||| || | ||| ||||| || ||||| |||| ||||| |||||||| | ||| || Sbjct 1172906 CTCCCGCTCACGGCCCTCCCACCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGT 1172965 Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 ||||||||||||||||| ||| | || || ||||||||||| | || ||||| |||||| Sbjct 1172966 GAGCTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAAC 1173025 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 || || || ||| |||||||||| |||||||| || || || || || || || Sbjct 1173026 ATCGCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGT 1173085 Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807 || || || || || ||||| ||||| || || |||||||| |||| |||| || Sbjct 1173086 GACCTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCCACTGAAA 1173145 Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGA 34858 || ||||| | ||||| || | || ||||| |||||||||| ||||| Sbjct 1173146 ATGCAGCTTCCGCGAGAACCAAGGCCTTTCCCGAAGCTCAAAATGCTTCGA 1173196 Score = 416 bits (460), Expect = 3e-111 Identities = 556/771 (72%), Gaps = 3/771 (0%) Strand=Plus/Minus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 ||||| |||||||||| ||||| || | || ||||| | ||||| || || | Sbjct 1173196 TCGAAGCATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGG 1173137 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| |||| |||||||| || || ||||| ||||| || || || || || || || Sbjct 1173136 CTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTT 1173077 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || || || || || |||||||| |||||||||| ||| || || |||||||| || Sbjct 1173076 CAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGG 1173017 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 ||| || | ||||||||||| || || | ||| ||||||||||||||||| || ||| | Sbjct 1173016 CACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCAC 1172957 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 |||||||| ||||| |||| ||||| || ||||| ||| | || ||||| | || || Sbjct 1172956 CACGTAGAACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGG 1172897 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| || ||||| | ||| |||||||||| |||||| || | ||||| |||| Sbjct 1172896 ATTCCAGGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCAC 1172837 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | |||||| ||||| |||| | || ||||| || | || | | || || || Sbjct 1172836 CTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGC 1172777 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 |||||| || |||||||| || | ||| || ||||| | || ||| ||| | | | Sbjct 1172776 CCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATC-TCCTTCTCTGGTG--GA 1172720 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 ||| ||| | |||||| | | |||| ||||| | ||||||||||| ||||| ||| Sbjct 1172719 GAATCCCAGGCTGTCCAAGACGCCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTT 1172660 Query 7027 GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 ||| || |||||||| | ||| |||| ||| | | |||||||||| ||||| | || Sbjct 1172659 GGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAAC 1172600 Query 7087 GCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCG 7146 ||||||||| | |||||||| || || ||||| |||||||| | | ||| |||| || Sbjct 1172599 ACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCG 1172540 Query 7147 GGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCC 7206 ||||| |||||||||| || ||||| || || || || ||||| |||||||| |||| Sbjct 1172539 CGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCGTCCTTCCGGGAGCC 1172480 Query 7207 CTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGCGG 7257 | |||||| | | ||| || |||||| |||||| ||||| Sbjct 1172479 GCAGCGGAGGATGTACTTAATCTGCCCCAAGTACTGCAGCTCCCCGTGCGG 1172429 >seq3311 Length=707574 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| || ||||| ||||| || |||||| |||| ||||| |||||||| | ||| Sbjct 355638 GATCTCCCGCTCATGGCCCTCCCGCCCTGCCACGCCCTTTGCCAGTTCTACGTGGTGAAC 355697 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || || |||||||||||||| | || ||||| ||| Sbjct 355698 GGTGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCCTTC 355757 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||| | |||||||| ||||||||||| || Sbjct 355758 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCACA 355798 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | ||| || || |||||||| ||||| || | ||| Sbjct 355798 TGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 355739 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| || || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 355738 ATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 355679 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| || ||||| ||||| || |||||||| Sbjct 355678 CAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 355638 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | |||||||| || ||| ||| ||||| ||||||||||| | ||||| | Sbjct 352417 CCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGACGCCAATGGGTCCC 352476 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||| |||||| | ||| ||| | | | || || || || | |||||||| | Sbjct 352477 GAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGAGATCTAGGCCCGGTTT 352536 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| || || ||||| || |||||||| || || Sbjct 352537 ACGGCTTTCAATGGAGGCATTTTGGGGCCGAATA 352570 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||| || || ||||| |||||||| | || || || || Sbjct 352570 TATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCT 352511 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||| |||||||| ||||| | ||||||||||| ||| Sbjct 352510 CTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTC 352451 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || |||||||| | ||| |||| Sbjct 352450 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGG 352417 >seq607 Length=1158648 Score = 134 bits (148), Expect = 1e-26 Identities = 336/513 (65%), Gaps = 37/513 (7%) Strand=Plus/Plus Query 6653 GCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGAC 6712 || |||||||| ||||| || | ||| ||| ||| || | || || ||| |||||||| Sbjct 687959 GCGATGTTGAAGGGCACACCCAGGCCCCTGTGTCCAGACCAGTGGTACAGCCGGCAGGAC 688018 Query 6713 AGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGA 6772 ||||| || | ||||| ||||| |||| |||| ||||||||| |||| ||| Sbjct 688019 AGCTCACC-------TCCTAGAACTGGCAAAGGGCATGGCCCGGGGGGAGGGCCAGGAGA 688071 Query 6773 GGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC 6832 || ||||| || || ||||| || |||| | ||| |||||||| ||| |||| || Sbjct 688072 GGAAGATCTTTGGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAAGGTTGGTTTTG 688131 Query 6833 AAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAA-TAGTCCGCTTCGCT 6891 | |||| ||| | ||| ||||| ||||||| |||||| || || | || | Sbjct 688132 ATCATGTCAGCCACCGTTTACAGTTGGTCTACTCCCTGACCCGAATTAATCTGAATCCAT 688191 Query 6892 CCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 | || || | || || || |||| || || ||||| || || || Sbjct 688192 ATCTTCGTATTCGGATCCCAAATGCCTCC-----------TACACTGGGCCTAAATC-CC 688239 Query 6952 CTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCA 7011 || |||| | | ||| ||| | |||| |||||||| ||||| | || ||||| Sbjct 688240 CT--TCCCTGGTGGAGAATCCCAGGCTGTCGGAGAAGTCTCGGGACCCATTGGCATCCCA 688297 Query 7012 GATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAG 7071 ||| || ||||||| |||| ||| | | | |||||||| Sbjct 688298 ---------------GGAAGACAGCTCCTCAATGTTTGTGAATTTCGTGATAAACCACAG 688342 Query 7072 CAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCC 7131 || |||||| || | |||||| | ||||||| || |||| ||| ||||| || | Sbjct 688343 CAACTCCTCCCAAACACTTTTCCAGAAACCACGTTTGGTTGTCACCAGGGGAAACTCATC 688402 Query 7132 CCGAAGGTTGTATCGGGCCTGTGTGCCGAACAC 7164 | ||| |||| || ||||| |||| |||||| Sbjct 688403 TCTCAGGCTGTAGCGCGCCTGCGTGCGGAACAC 688435 Score = 134 bits (148), Expect = 1e-26 Identities = 336/513 (65%), Gaps = 37/513 (7%) Strand=Plus/Minus Query 34181 GTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAA 34240 |||||| |||| ||||| || |||| ||| | | || ||||| ||| |||| || ||| Sbjct 688435 GTGTTCCGCACGCAGGCGCGCTACAGCCTGAGAGATGAGTTTCCCCTGGTGACAACCAAA 688376 Query 34241 CGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAAC 34300 |||| | |||||| | || |||||| |||||||||| | | | ||| ||| Sbjct 688375 CGTGGTTTCTGGAAAAGTGTTTGGGAGGAGTTGCTGTGGTTTATCACGAAATTCACAAAC 688316 Query 34301 ACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTT 34360 | ||||||| || ||| ||||| || | ||||| |||||||| Sbjct 688315 ATTGAGGAGCTGTCTTCC---------------TGGGATGCCAATGGGTCCCGAGACTTC 688271 Query 34361 CTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 |||| | ||| ||| | | |||| |||| || || ||||| || || Sbjct 688270 TCCGACAGCCTGGGATTCTCCACCAGGGA--AGGG-GATTTAGGCCCAGTGTA------- 688221 Query 34421 CAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTA-TTCGGGACAGGG 34479 |||| || || || | || || | | || | || || |||||| ||||| Sbjct 688220 ----GGAGGCATTTGGGATCCGAATACGAAGATATGGATTCAGATTAATTCGGGTCAGGG 688165 Query 34480 AGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGAT 34539 || ||||| ||| | ||| |||| | || |||| ||| |||||||| || Sbjct 688164 AGTAGACCAACTGTAAACGGTGGCTGACATGATCAAAACCAACCTTGACGACAGAAGAAT 688105 Query 34540 CGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACAC 34599 | | |||| || ||||| || || ||||| ||||| |||| ||||||||| |||| | Sbjct 688104 CATCCTGTGTGCTTGGAATCCCAAAGATCTTCCTCTCCTGGCCCTCCCCCCGGGCCATGC 688045 Query 34600 CCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGG 34659 ||| ||||| ||||| | || ||||||||||||| ||| || || | || || Sbjct 688044 CCTTTGCCAGTTCTAGGA-------GGTGAGCTGTCCTGCCGGCTGTACCACTGGTCTGG 687992 Query 34660 AGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 | ||| ||| | || ||||| |||||||| || Sbjct 687991 ACACAGGGGCCTGGGTGTGCCCTTCAACATCGC 687959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448187685864480