Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq157 178 1e-39 seq743 138 9e-28 seq738 131 1e-25 seq632 122 7e-23 seq1450 109 5e-19 >seq157 Length=3278046 Score = 178 bits (196), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || |||||||| | ||||| |||||||||||| | || || |||||| ||||||||| Sbjct 3276151 CCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCGGAAAACATG 3276092 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| || || | |||| |||||||| || ||||| || || || || || || ||| Sbjct 3276091 ATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAAC 3276032 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || | || ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 3276031 ATCACCCAACTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 3275972 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || ||||| |||||||| | || || || ||||| ||||||||||| |||||| ||| Sbjct 3275971 GAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 3275912 Query 1515 TGTCTAACCCT 1525 || || ||||| Sbjct 3275911 TGCCTCACCCT 3275901 >seq743 Length=10780527 Score = 138 bits (152), Expect = 9e-28 Identities = 364/549 (66%), Gaps = 25/549 (5%) Strand=Plus/Plus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || |||| || || || || || | ||||| ||||| || | | Sbjct 3844855 GCTGTGTCCCAGAACATGGATATGGGCAAGAATGGGGACCTGCCCTGGCCCCCGGTCAGG 3844914 Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271 |||||||| || | || |||| |||||| | | |||| | || || ||| | Sbjct 3844915 AATGAATTCAAGTACTTCCAAAGAATGACCACAGCCTCTTTAGCAGAAGGTAAGCAGCGT 3844974 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTC-ACTTCCCATTAAAAGCA--GGCCTTTG 2328 | || |||||||| |||||||| ||||| || ||| || | ||| | | ||||| Sbjct 3844975 TTGGTGATTATGGGTAGAAAGACCTGGTTCTCCACT---CAAGAGAAGGACTGACCTTTA 3845031 Query 2329 AACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCAC 2388 || ||||||| | | | ||||| |||||| | || | || | |||| || ||||| Sbjct 3845032 AAGGACAGAATTAGTTTAGTTCTAAGTAGAGAACTCAGGGAACTTCCACA-GGAGCTCAT 3845090 Query 2389 TTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGAC 2448 ||| ||| |||||| | ||| | || | || |||| ||||||||||| | | Sbjct 3845091 TTTTTTGACAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAACCAGAATTAACAAAT 3845150 Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT-ACAAG 2507 | |||| | |||||||| | || || || ||||| || |||| ||| ||||| Sbjct 3845151 TAAGCAGATATGGTTTGGATAGTGGGAGGTAGCTCTGTTTA--AGGAAGCCATGGACAAG 3845208 Query 2508 -------ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTG 2560 ||||| | ||| | |||||||| |||| ||||||| ||| Sbjct 3845209 CCAGGTCATCTTAGATTATCCTGCAGG-----ACAAGGATCATGCAGGAATTTGAGAGTG 3845263 Query 2561 ATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620 | || || | ||||| | || | ||||| |||| ||| | |||| |||||||| Sbjct 3845264 GCATATTTTTTCTAGAAACTGATTTGGAAAAATATAAACTTCTTCCAGAATATCCAGGTG 3845323 Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680 ||||||||| || || || |||| || |||| ||||||||||| |||||||||| | Sbjct 3845324 TTCCCTCTGATGTCCAGGAGAAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGA 3845383 Query 2681 aaaCATAAT 2689 | | |||| Sbjct 3845384 ACAATTAAT 3845392 >seq738 Length=1970462 Score = 131 bits (144), Expect = 1e-25 Identities = 404/617 (65%), Gaps = 21/617 (3%) Strand=Plus/Minus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | ||||||||||||| ||||||||| || | || ||||| || | || ||| Sbjct 1173153 AGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 1173094 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | | ||||| || | || ||||| | ||| ||||||||||| || | || | |||| Sbjct 1173093 ACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAG 1173034 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || || ||||| ||||||||| |||| | || |||| ||||| Sbjct 1173033 CTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAG 1172974 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || ||||| ||||| | || || ||||| | | | || || || || || || || Sbjct 1172973 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTG 1172914 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTG-CTATATGGT 118749 || || ||||||||||| | ||||| |||||| | || ||| Sbjct 1172913 AGCGGGAGGTGTTTTGGATTCCAGGC-----ACACATGATGATTCTTCTGTCATTAGGGT 1172859 Query 118750 TCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGA 118809 | || || ||| | | ||||| | || || || || || || | ||| | Sbjct 1172858 TGGTTTTG-ATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCT 1172800 Query 118810 GACT-CGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCC 118868 || | || || ||| ||||| ||||||||| ||||| ||||| | || || || || Sbjct 1172799 GAATCCGTAT-CTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCC 1172741 Query 118869 CAGATCTCC--CTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCA 118926 |||||||| || | | |||| || | || | | || |||||| Sbjct 1172740 TAGATCTCCTTCTCTGGTGGAGAATC----CCAGGCTGTC-CAAGACGCCTCGGGACCCA 1172686 Query 118927 TTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTT 118986 || || | ||| || ||||| || | ||| || |||| |||||| || || | Sbjct 1172685 TTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTG 1172626 Query 118987 AAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGT 119046 | |||||| || | ||||| | ||| || |||| ||||| ||| ||||| | |||| Sbjct 1172625 ATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGT 1172566 Query 119047 GGAAACTGACCTCTAAG 119063 ||||| | | |||| || Sbjct 1172565 GGAAATTCATCTCTGAG 1172549 >seq632 Length=9001482 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 8791601 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 8791542 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 8791541 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 8791482 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 8791481 ATCGCCCTGTGGATGACTGA 8791462 >seq1450 Length=2474494 Score = 109 bits (120), Expect = 5e-19 Identities = 228/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || ||||| || || || || | | |||| |||| || || | ||||||||||| Sbjct 2026210 AACATGGGTATCGGCAAGAACAGGGACCTGCACTGGCACCCACTCAGGAATGAATTTAAG 2026269 Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283 |||| ||| |||||| | | ||||| || ||||||||| | || ||||| Sbjct 2026270 TATTTCAAAAGAATGACCACAGCCTCTTCAGTAGAAGGTAAACAGAATTTGGTGATTATT 2026329 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAACA-ACAGAATAAA 2342 || |||||||| ||||| || |||| || | | ||||| || ||||||| || Sbjct 2026330 GGTAGAAAGACCTGGTTCTCCATTCCAGAGAAGAATCGACCTTTAAAAGGACAGAATTAA 2026389 Query 2343 TCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAG 2402 | | |||||||||||| | | || || || |||| || ||||| ||| |||| | ||| Sbjct 2026390 TTTAGTTCTCAGTAGAGAATTCAAGGAACCTCCACAAGGAGCTCATTTTCTTGCCAGAAG 2026449 Query 2403 TATAGATCACGCTCTGGAAATTATAATAG-GACCAGAATTAAAAGACAGGGTGGATAAGA 2461 | | ||| | || || ||| | ||| || |||||||| ||| | ||||| | Sbjct 2026450 TCTGGATGATGC-CTTAAAACTTACCTAGCAACTAGAATTAACAGATAAAGTGGACATAG 2026508 Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 |||||| | ||| || || ||||| ||| |||| Sbjct 2026509 TTTGGA-CAGTGGAGGCAGTTCTGTTTATAAGGA 2026541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414409444152376