Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2140 181 2e-40 seq83 127 5e-24 seq8397 122 2e-22 seq2372 111 4e-19 seq590 104 5e-17 seq814 96.9 8e-15 seq642 87.8 4e-12 >seq2140 Length=878742 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| ||||| | ||| || | |||||| Sbjct 744609 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 744668 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || | || ||||||||||| | || ||||| ||| Sbjct 744669 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 744728 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || ||||| || ||||| ||| Sbjct 744729 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 744788 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| | ||||| || || | ||||||||| Sbjct 744789 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 744823 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 744153 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 744212 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || | || ||||||||||| | || ||||| ||| Sbjct 744213 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 744272 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | || ||||| || ||||| ||| Sbjct 744273 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 744332 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 744333 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 744364 Score = 178 bits (196), Expect = 3e-39 Identities = 169/215 (79%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| ||||| | ||| || | |||||| Sbjct 744381 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 744440 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || | || ||||||||||| | |||||||| ||| Sbjct 744441 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 744500 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||||| ||||||||||| ||| || ||||| || ||||| Sbjct 744501 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---GCTAGGCTCCACCTCCAGGGTGATG 744557 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 744558 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 744592 >seq83 Length=833179 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 394649 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 394590 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| | | || ||||| || || | || || || || Sbjct 394589 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCT 394530 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 394529 TGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 394470 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| | ||||| || || | ||||||| Sbjct 394469 TTACCCGTCAAGGTCTTCACGAAGATCTGCATT 394437 >seq8397 Length=2660 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| || || || || || | | || | ||||| Sbjct 2172 AGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCC 2113 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| |||| || || || || | || |||||||| || | || |||||||| Sbjct 2112 TCCAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 2053 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || |||||||| | |||||||| || ||||| ||| Sbjct 2052 TGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1993 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||| | || ||||| ||||| |||||||| Sbjct 1992 TTGCCCATCAGGGTCTTCACAAAGACCTGCAT 1961 >seq2372 Length=486337 Score = 111 bits (122), Expect = 4e-19 Identities = 149/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGA---TGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 ||| || |||||||| || || | | || || || | || || | ||||| || || Sbjct 216843 GTGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCTGACAGAGTGCAGCCATCCTCTAG 216902 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 ||| ||||| | || || || | || || ||||| || | || |||||||||||||| Sbjct 216903 CTGTTTGCCCACAAAAATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTTGTCCTGGAT 216962 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 || ||| || || || |||||||| | ||||||||||| ||||| ||||| || Sbjct 216963 TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 217022 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| ||||| | |||||| Sbjct 217023 CGTCAGGGTCTTCACAAAGATCTGCAT 217049 >seq590 Length=3402153 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||||||||| || | | ||||| | || || | ||||| |||||||| || || Sbjct 1072877 GTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCC 1072818 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 | ||| || || | || |||||||| || | || |||||||| | ||| | ||| Sbjct 1072817 GTGAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTG 1072758 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || | ||||||||| | ||||||||||| ||||| ||||| || || || ||| Sbjct 1072757 ACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTC 1072698 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||| || Sbjct 1072697 TTCACAAAGATCTGTAT 1072681 >seq814 Length=1518267 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||| |||| | ||| | ||||| |||||||| ||||| | ||| || | ||||||| Sbjct 269414 AGGATCAGGTACAAAGTTTATTCTTTCTGGATGTTTTAATCAGAAAGAGTACATCCATCT 269473 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| |||||||| ||||| || || |||||||| | | ||||||||| | Sbjct 269474 TCCAGCTGTTTGCCTGCAAAGATGAGTGTCTGCTGGTCAGGGAGGATGCCTTCCTTGGTC 269533 Query 211023 TGGATCTT 211030 |||||||| Sbjct 269534 TGGATCTT 269541 >seq642 Length=3842526 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 ||||||| | ||||| |||||||||||||| ||||| ||||| || || || || | Sbjct 2701442 GAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AGAGTAC 2701497 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 || |||||| | ||||| | || |||||| | | ||| || | ||| ||| ||||| Sbjct 2701498 GTCTGTCTTCCGGTTGCTTCCTAGCAAAGATAGGTCTTTGCTGATTGGGAAGAATTCCTT 2701557 Query 211015 CCTTGTCCTGGATCTT 211030 |||| || ||||| || Sbjct 2701558 CCTTATCTTGGATGTT 2701573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158953968298910