Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2140 147 5e-30 seq83 134 3e-26 seq8397 84.2 5e-11 seq699 84.2 5e-11 >seq2140 Length=878742 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || || || |||| |||||||| | | ||| | ||||| Sbjct 744608 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 744667 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || | || ||||| || || || || ||||| || Sbjct 744668 TTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATC 744727 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||||||||||| || ||||| || | ||||| || Sbjct 744728 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 744787 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||||| || || | ||| | |||||||| Sbjct 744788 CTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 744823 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||| Sbjct 744153 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 744212 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || | || ||||| || || || || ||||| || Sbjct 744213 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 744272 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 744273 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 744332 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 744333 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 744364 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || || || |||| |||||||| | | ||| | ||||| Sbjct 744380 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 744439 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || | || ||||| || || || |||||||| || Sbjct 744440 TTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 744499 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||||||||||| | ||||| || | ||||| || Sbjct 744500 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGT 744559 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 744560 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 744592 >seq83 Length=833179 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| ||||||||||| || |||| ||||| || | || || | |||||| Sbjct 394650 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 394591 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || || || || Sbjct 394590 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTC 394531 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 394530 TTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 394471 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| |||||||| || || | ||| | |||||| Sbjct 394470 CTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 394437 >seq8397 Length=2660 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| || | |||||| || | ||| | ||||| Sbjct 2172 AGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCC 2113 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || | || || || || | || ||||| || || || || ||||||||| Sbjct 2112 TCCAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 2053 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| || ||||||| || || || || | ||||| || Sbjct 2052 TGGAT-TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 1994 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||| ||| || || | || || ||||| Sbjct 1993 CTTGCCCATCAGGGTCTTCACAAAGACCTGCAT 1961 >seq699 Length=2498268 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || || ||| ||||| ||||| |||||||| | Sbjct 1552350 CACTTCAGTACCTGGCGCCCTACTCCGGGTGCTCTATGGGAGAGTATTTCAGAGATAACG 1552291 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| |||||||| || || ||| ||||| |||| Sbjct 1552290 GCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 1552245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192327465733796