Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq418 114 1e-20 seq1884 107 2e-18 seq1615 107 2e-18 seq1855 84.2 2e-11 seq459 84.2 2e-11 >seq418 Length=964272 Score = 114 bits (126), Expect = 1e-20 Identities = 212/304 (70%), Gaps = 9/304 (3%) Strand=Plus/Minus Query 31766 GCGCTAGTTAAAACCGATATT-CAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || || || |||||||| ||| || || || | ||||| |||| |||||| || |||| Sbjct 659852 GCCCTTGTGAAAACCGACATTTCAGATAGCTCTTCCTTCTGGGTACTACGGGAGAGTAGC 659793 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||||| | |||||||| || || || || || ||||| | |||| Sbjct 659792 TCCACGTTCAGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGA 659733 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| |||| |||||| ||||| |||| | ||||||||||| |||||| | | || Sbjct 659732 AGATTATACAGGAAATGTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 659674 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 | |||||||| ||| | | || || || ||||| ||| | || || |||| Sbjct 659673 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACAGATTTTCCACCCAGAAAT 659616 Query 32002 AGAAGTAGCT-AATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCG 32060 ||| | || | || | | ||||| ||| |||| ||| | ||| ||||| || || | Sbjct 659615 AGAGGAAGTTCAAGTGT-TAGATGACACTGAAAGGGGCTCAGGAGGTTTTGGTTCCACTG 659557 Query 32061 GAAA 32064 |||| Sbjct 659556 GAAA 659553 >seq1884 Length=2638154 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| || ||||| || ||||| || | || ||||| | ||||||||| | Sbjct 1844779 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 1844838 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||||||||| ||||| || || || ||||| || ||||| || || ||||| | Sbjct 1844839 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 1844898 Query 4690 CTAC 4693 | || Sbjct 1844899 CCAC 1844902 >seq1615 Length=6207710 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || ||||| || | || ||||| | |||| ||| || Sbjct 3959930 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 3959871 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 3959870 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 3959811 Query 4692 AC 4693 || Sbjct 3959810 AC 3959809 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 3957816 TCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 3957757 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 3957756 ATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTC 3957713 >seq1855 Length=2774055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || || ||| ||||| || |||| ||||| |||||| ||| || |||| Sbjct 1325116 GCCCTTGTGAAGACCAGCATTCAGATAGCTTTCCCTTCTGGGTGCCTTGGAGGAGCAGCT 1325175 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | || || || | | |||||||| || || || || || ||||| |||||| | Sbjct 1325176 CCATGTTCAGGCCTGACTGCAAAACACTTCATGGATGTAGGAGCTGGTGTCATAGATGAA 1325235 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 || || |||||||| ||||| ||| | ||||||||||| |||||| Sbjct 1325236 GATTACAGAGGAAATGTTGGTGTTGCACTATTTAATTTTGGCAAAGAAAA 1325285 >seq459 Length=1557904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || |||||||| ||||| || || | ||||| ||| ||| || | || | Sbjct 788670 GCCCTCGTGAAAACCGACATTCAGATAGCTCTTCCTTCTGGGCGCTGTGGGAAAGCAGTT 788611 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | || || ||||| | |||||||| || || || || || ||||| |||||| | Sbjct 788610 CCACGTTCAGGCTTGGCTGCCAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAA 788551 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 || |||||||||| | ||| ||| | ||||||||||| Sbjct 788550 GATCATAGAGGAAATGGTGGTGGTGTACTATTTAATTTTGG 788510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426980200970222