Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20ferus_20[refseq_20GCF_5F000311805.1_202013-07-30] 13,334 sequences; 2,009,194,609 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq558 127 3e-24 seq1615 111 2e-19 seq1884 93.3 6e-14 seq418 91.5 2e-13 >seq558 Length=2742737 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | || Sbjct 2658057 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 2657998 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||||||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 2657997 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 2657938 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 2657937 TTTCTTATACCAT 2657925 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || ||||| ||||| |||||||| || |||||||| || || Sbjct 2642424 AGTGCCAGCATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACTTCTCAGAAAGAAGGTT 2642365 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||| ||||||||||| | || || || || ||||| || || | ||| | |||||| Sbjct 2642364 GTAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAA 2642305 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 ||||||||| ||||| ||| || Sbjct 2642304 CATATGCTGTGGTCTCTCAGCC 2642283 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 2649692 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 2649633 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || |||||||| ||||| || | ||| |||||||| | || || ||||||| || Sbjct 2649632 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 2649573 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 2649572 TCCAGGTAAATAGCAAATGCACCAGGTCG 2649544 >seq1615 Length=6207710 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 3959930 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 3959871 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 3959870 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 3959812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 3961323 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 3961264 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 3961263 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 3961204 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 3961203 CATAAAGTCAAATGGATT 3961186 >seq1884 Length=2638154 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | || | Sbjct 1844779 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 1844838 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| || || ||||| || || ||||| || ||||| || || ||||| | Sbjct 1844839 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 1844898 Query 48283 C 48283 | Sbjct 1844899 C 1844899 >seq418 Length=964272 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/363 (67%), Gaps = 20/363 (6%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||||| | |||||||| |||||| ||| |||||| Sbjct 659555 TCCAGTGGAACCAAAACCTCCTGAGC--CCCTTTCAGTGTCATCTAACACTTGAACTTCC 659612 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || | | || ||| | | || || || || |||| ||||||| | || Sbjct 659613 TCTATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 659672 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | || | || |||| | ||| |||||||| Sbjct 659673 ACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGTATAATCT 659732 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||| | || || |||| ||||| || |||| || || || || | ||| Sbjct 659733 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGAACGTGGA 659792 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCG-AATATCTGTTTTAATCA 46165 |||| ||| || || ||||| || | || ||| | ||| || ||||| | || Sbjct 659793 GCTACTCTCCCGTAGTACCCAGAA----GGAAGAGCTATCTGAAATGTCGGTTTTCA-CA 659847 Query 46166 ATCTCCTTTCTCCAGGAGGGAT--AGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 | || ||||||| | | ||| || || |||| |||||||| | ||||| || || Sbjct 659848 AGGGCC-TTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCCGC 659906 Query 46224 TGC 46226 || Sbjct 659907 GGC 659909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694553016077760