Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq39 122 9e-23
seq13 111 2e-19
seq17 89.7 5e-13
>seq39
Length=123869142
Score = 122 bits (134), Expect = 9e-23
Identities = 252/369 (68%), Gaps = 7/369 (2%)
Strand=Plus/Minus
Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTT 16457
|| ||||| | ||||||||| ||| || || ||||| || || | | ||| |||| |
Sbjct 94450230 TCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTGAAGAGAAATTCCCTTTCT 94450171
Query 16458 CCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCT 16517
|||| | | ||| | || |||| || | || ||||| || |||| ||||| |
Sbjct 94450170 TTAGAATCTTTA--ATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTTTT 94450113
Query 16518 CTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAA 16577
| | | | || || ||||||||||| || | || || || || ||||| | ||
Sbjct 94450112 CCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGATAA 94450053
Query 16578 ATCGTTCCGCCAGGTTCT-CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATG 16636
| | ||| ||| ||| | | || || || || |||||||| |||| || ||||| ||
Sbjct 94450052 ACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAATA 94449993
Query 16637 TGCTTAATGAAATATTTTTCGTCAGATGT-AAGAATATGCCAATCTTTTAAATCTTTGGA 16695
|| || |||||| | || |||| | | || || | ||||| | | || |||||
Sbjct 94449992 TGGGGTATAAAATATCTCTCCTCAGGTTTCGAGGAT-TCCCAATGCTGAATGTCCTTGGA 94449934
Query 16696 TATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755
| |||||| ||||| | ||||||||| |||| | || || |||||||| | ||||||
Sbjct 94449933 AAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAAT 94449874
Query 16756 ATCATTGTA 16764
| ||| |||
Sbjct 94449873 ACCATGGTA 94449865
>seq13
Length=63241923
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| ||||||||||| | || ||||| |||| |||||
Sbjct 3818023 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 3818082
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| || || || |||| |||||||
Sbjct 3818083 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 3818142
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 3818143 CCACGACTCTTTCC 3818156
Score = 84.2 bits (92), Expect = 2e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984
||| ||||| || ||||| |||||||| || |||||||| || |||||||||||||||||
Sbjct 3799321 AACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 3799380
Query 15985 GGGATT 15990
||||||
Sbjct 3799381 GGGATT 3799386
>seq17
Length=64289059
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| |||||||| || | || ||||| || ||||||||
Sbjct 7110692 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTG 7110633
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| | ||||| || ||||||||||| || || || || | ||||| ||
Sbjct 7110632 AGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGC 7110574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511393508721760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |