Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq39 122 9e-23 seq13 111 2e-19 seq17 89.7 5e-13 >seq39 Length=123869142 Score = 122 bits (134), Expect = 9e-23 Identities = 252/369 (68%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTT 16457 || ||||| | ||||||||| ||| || || ||||| || || | | ||| |||| | Sbjct 94450230 TCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTGAAGAGAAATTCCCTTTCT 94450171 Query 16458 CCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCT 16517 |||| | | ||| | || |||| || | || ||||| || |||| ||||| | Sbjct 94450170 TTAGAATCTTTA--ATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTTTT 94450113 Query 16518 CTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAA 16577 | | | | || || ||||||||||| || | || || || || ||||| | || Sbjct 94450112 CCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGATAA 94450053 Query 16578 ATCGTTCCGCCAGGTTCT-CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATG 16636 | | ||| ||| ||| | | || || || || |||||||| |||| || ||||| || Sbjct 94450052 ACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAATA 94449993 Query 16637 TGCTTAATGAAATATTTTTCGTCAGATGT-AAGAATATGCCAATCTTTTAAATCTTTGGA 16695 || || |||||| | || |||| | | || || | ||||| | | || ||||| Sbjct 94449992 TGGGGTATAAAATATCTCTCCTCAGGTTTCGAGGAT-TCCCAATGCTGAATGTCCTTGGA 94449934 Query 16696 TATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 | |||||| ||||| | ||||||||| |||| | || || |||||||| | |||||| Sbjct 94449933 AAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAAT 94449874 Query 16756 ATCATTGTA 16764 | ||| ||| Sbjct 94449873 ACCATGGTA 94449865 >seq13 Length=63241923 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| ||||| Sbjct 3818023 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 3818082 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||||| Sbjct 3818083 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 3818142 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 3818143 CCACGACTCTTTCC 3818156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| |||||||| || |||||||| || ||||||||||||||||| Sbjct 3799321 AACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 3799380 Query 15985 GGGATT 15990 |||||| Sbjct 3799381 GGGATT 3799386 >seq17 Length=64289059 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| || |||||||| Sbjct 7110692 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTG 7110633 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || ||||||||||| || || || || | ||||| || Sbjct 7110632 AGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGC 7110574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511393508721760