Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq17 129 7e-25 seq21 125 8e-24 seq13 86.0 7e-12 >seq17 Length=64289059 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || | Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || || |||||||| |||||||| || || ||||||| Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 7110574 CCACAACCCGTTCTCC 7110559 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| ||| || ||||| | ||||||||||| || || || |||||||| ||||| Sbjct 7108469 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAGTGGATGTTTTCCATGGC 7108410 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 7108409 AATTTGGAAGCCATAGAAACAGCGGGCTTCCGTAATCTGAACTTCT 7108364 >seq21 Length=50858623 Score = 125 bits (138), Expect = 8e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| || || ||||| ||||| || || || |||||||| ||||| | Sbjct 26626588 ACCTGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 26626529 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 26626528 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 26626469 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 26626468 CTGTTTCTTACACCATA 26626452 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 || ||| |||| || || ||||| || | || || || || ||||| || ||||| || Sbjct 26621657 GAACCTTCATAGGTTTCATATGGCCCATGCTCCTTGGCCAGGTCACAGCTGGCCTCCAAG 26621598 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || || |||||||||||||| ||||| | |||||| || || ||||| | || ||| Sbjct 26621597 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 26621538 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || ||||| | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 26621537 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 26621478 Query 53561 CTATGTCTCTTATTAGA 53577 | ||| | ||||| || Sbjct 26621477 CGATGGCGTTTATTTGA 26621461 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| || ||||| |||||||||||||| | || || || |||| | Sbjct 26616519 CTCCACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACG 26616460 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || ||||| || ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 26616459 CTGTTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 26616400 Query 54145 CGGTTCCAAGTATAT 54159 ||||||| ||| || Sbjct 26616399 AGGTTCCAGGTAAAT 26616385 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || ||||| || || || || || | Sbjct 26604885 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGA 26604826 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || ||||| | || || | || || ||| | || || | || ||| |||| Sbjct 26604825 TGGCATAGTCAGGATGCTTAGTCGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 26604766 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 26604765 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 26604720 >seq13 Length=63241923 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| | ||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 3829832 ACCTCTTCTGCAGTCCAGAAAGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 3829891 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 |||||||||||||| || ||||||| Sbjct 3829892 TATTGAATTGGAAAGATGACAAATC 3829916 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||| ||||||||||||||||| || |||| || |||||| Sbjct 3826431 AAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 3826490 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 || || || |||| | | || || ||||| | | || ||| || |||| Sbjct 3826491 TACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 3826539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593697346472640