Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq17 129 7e-25
seq21 125 8e-24
seq13 86.0 7e-12
>seq17
Length=64289059
Score = 129 bits (142), Expect = 7e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | ||| |||||||||||||| || ||||| ||||| || || |
Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| |||||||| || || |||||||| |||||||| || || |||||||
Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575
Query 24277 CAATAAGTCTTTCTCC 24292
| | || | ||||||
Sbjct 7110574 CCACAACCCGTTCTCC 7110559
Score = 96.9 bits (106), Expect = 4e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| ||| || ||||| | ||||||||||| || || || |||||||| |||||
Sbjct 7108469 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAGTGGATGTTTTCCATGGC 7108410
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || |||||||| | || || |||||||| ||||||
Sbjct 7108409 AATTTGGAAGCCATAGAAACAGCGGGCTTCCGTAATCTGAACTTCT 7108364
>seq21
Length=50858623
Score = 125 bits (138), Expect = 8e-24
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| || || ||||| ||||| || || || |||||||| ||||| |
Sbjct 26626588 ACCTGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 26626529
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 26626528 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 26626469
Query 53270 CTATTTCTAAGACCGTA 53286
|| ||||| | ||| ||
Sbjct 26626468 CTGTTTCTTACACCATA 26626452
Score = 113 bits (124), Expect = 5e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440
|| ||| |||| || || ||||| || | || || || || ||||| || ||||| ||
Sbjct 26621657 GAACCTTCATAGGTTTCATATGGCCCATGCTCCTTGGCCAGGTCACAGCTGGCCTCCAAG 26621598
Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500
|| || |||||||||||||| ||||| | |||||| || || ||||| | || |||
Sbjct 26621597 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 26621538
Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560
|| ||||| | | |||||||| || ||||| | ||||| || ||||| || || ||
Sbjct 26621537 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 26621478
Query 53561 CTATGTCTCTTATTAGA 53577
| ||| | ||||| ||
Sbjct 26621477 CGATGGCGTTTATTTGA 26621461
Score = 100 bits (110), Expect = 3e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| || ||||| |||||||||||||| | || || || |||| |
Sbjct 26616519 CTCCACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACG 26616460
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
||||| || ||||| || ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 26616459 CTGTTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 26616400
Query 54145 CGGTTCCAAGTATAT 54159
||||||| ||| ||
Sbjct 26616399 AGGTTCCAGGTAAAT 26616385
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| |||||||||||||| | || || ||||| || || || || || |
Sbjct 26604885 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGA 26604826
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || ||||| | || || | || || ||| | || || | || ||| ||||
Sbjct 26604825 TGGCATAGTCAGGATGCTTAGTCGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 26604766
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 26604765 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 26604720
>seq13
Length=63241923
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692
|| ||||| | ||||| || ||||||| ||||| ||||||||| ||||| || ||| |
Sbjct 3829832 ACCTCTTCTGCAGTCCAGAAAGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 3829891
Query 24693 TATTGAATTGGAAAAATAACAAATC 24717
|||||||||||||| || |||||||
Sbjct 3829892 TATTGAATTGGAAAGATGACAAATC 3829916
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578
|||||||||||||| ||||| ||||||||||||||||| || |||| || ||||||
Sbjct 3826431 AAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 3826490
Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627
|| || || |||| | | || || ||||| | | || ||| || ||||
Sbjct 3826491 TACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 3826539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593697346472640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |