Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq20 262 5e-65 seq12 136 5e-27 seq24 116 5e-21 >seq20 Length=58134056 Score = 262 bits (290), Expect = 5e-65 Identities = 261/338 (77%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||| ||| |||||||| ||||| | | | ||| || ||||| |||| ||||||||| Sbjct 39890027 AGCAAGGCTTCGATGTCAGGCTCGATATCGATGGTTGGGAAGCGGCGGCTATACCTGCGC 39889968 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||| | ||||||||| ||||||||||| |||||||||||| Sbjct 39889967 ACAGGCACACCATCTGGGCCCACTAGGAACTTCTCAAAGTTCCAGGCAACGTCGTTGCGG 39889908 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || ||||||| ||| |||| | ||||||| || Sbjct 39889907 CACACCGGGGACCAGGTGATGAACTTGGGGTCGGTCATTAGCGCAGTGGTGTCGTCACTG 39889848 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| | ||| || |||||||||||||| || || ||| || ||||| ||| Sbjct 39889847 GGGGCAGGCAGAGACTCCCGCAGGAAGGCGAAGAGGGGGTGCGCCTGCGCGCCGTTCACC 39889788 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || ||| | ||||| |||||||| ||| ||||| || |||| ||| Sbjct 39889787 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGAACGTACTTG 39889728 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | |||| ||||||||||| Sbjct 39889727 AGGGAATTCAGGATCTCTTCGTTCTTAGCGTTTTCCTG 39889690 Score = 214 bits (236), Expect = 2e-50 Identities = 174/211 (82%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 39889432 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACAACCAGGCCCCGGGGTCCGAGGC 39889373 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 39889372 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 39889313 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | | || | ||||| |||||| || |||| Sbjct 39889312 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCATAGGTTCCCCGCCGG 39889253 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | ||| || ||||||||||||||||| || Sbjct 39889252 CCAGCGGACGCGCTGAGAAGGCGTACACGGA 39889222 >seq12 Length=72498081 Score = 136 bits (150), Expect = 5e-27 Identities = 195/267 (73%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 64306953 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCATCGCGCCTGC 64306895 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 64306894 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 64306835 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 64306834 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 64306776 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| ||||| ||||| ||| | | ||||| |||||||||| ||||| ||| Sbjct 64306775 GTGCAGCTGCTGTACCCGCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTCGTGGG 64306717 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 64306716 CAAGCTGGACGAGCGCTGCCGGCGCCG 64306690 >seq24 Length=47698779 Score = 116 bits (128), Expect = 5e-21 Identities = 186/263 (71%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGG-GTCGCTCACGA 83216 |||||| || | || |||| |||||| |||| ||||||| ||| || | |||||| Sbjct 16431663 CCAGGCAACACGGGTGTGGCAACCTGGAGGCCAGATGATGAGCTTGGGTGTTGGTCACGA 16431722 Query 83217 GCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGAT 83276 || | ||| ||| || || | ||||| ||||| | | |||||| |||||| || | Sbjct 16431723 GCACAGTGGTGTTGTCACTGGGGCCAGGCAGAGCCTCCCATGGGAAGGTGAAGAGAGGGT 16431782 Query 83277 GTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGT 83336 | || |||||| | |||||||||||||| | ||| |||| | | ||| ||||| Sbjct 16431783 GCACCTGTGCACCCTCCACCTCGCACTTCTCCAGAGGCACAAAGGTGGACTC-AAGCCCA 16431841 Query 83337 TC-CCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 | | || | || || ||| |||||| | |||||| ||||| ||| |||||||| Sbjct 16431842 CCGCTGGGTCAGATGTACTTGAGGGAATTGAGGATCTCTTCATTCCTGGCATTTTCCTGA 16431901 Query 83396 TGACCGAACTGGTTACACGGGAA 83418 || | ||||||| | |||| ||| Sbjct 16431902 TGCCTGAACTGGCTCCACGAGAA 16431924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608771930650720