Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq20 262 5e-65
seq12 136 5e-27
seq24 116 5e-21
>seq20
Length=58134056
Score = 262 bits (290), Expect = 5e-65
Identities = 261/338 (77%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||| ||| |||||||| ||||| | | | ||| || ||||| |||| |||||||||
Sbjct 39890027 AGCAAGGCTTCGATGTCAGGCTCGATATCGATGGTTGGGAAGCGGCGGCTATACCTGCGC 39889968
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| || || | ||||| | ||||||||| ||||||||||| ||||||||||||
Sbjct 39889967 ACAGGCACACCATCTGGGCCCACTAGGAACTTCTCAAAGTTCCAGGCAACGTCGTTGCGG 39889908
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| || ||||||| |||| || ||||||| ||| |||| | ||||||| ||
Sbjct 39889907 CACACCGGGGACCAGGTGATGAACTTGGGGTCGGTCATTAGCGCAGTGGTGTCGTCACTG 39889848
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| || ||||| | ||| || |||||||||||||| || || ||| || ||||| |||
Sbjct 39889847 GGGGCAGGCAGAGACTCCCGCAGGAAGGCGAAGAGGGGGTGCGCCTGCGCGCCGTTCACC 39889788
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
||||||||||| || ||| | ||||| |||||||| ||| ||||| || |||| |||
Sbjct 39889787 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGAACGTACTTG 39889728
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
|||||| || |||||| | |||| |||||||||||
Sbjct 39889727 AGGGAATTCAGGATCTCTTCGTTCTTAGCGTTTTCCTG 39889690
Score = 214 bits (236), Expect = 2e-50
Identities = 174/211 (82%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || ||||||||||| |||||||| || ||||| ||||| ||||| | ||| ||||
Sbjct 39889432 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACAACCAGGCCCCGGGGTCCGAGGC 39889373
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| |
Sbjct 39889372 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 39889313
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||||||||||| ||| |||||| | | | || | ||||| |||||| || ||||
Sbjct 39889312 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCATAGGTTCCCCGCCGG 39889253
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601
| ||| || ||||||||||||||||| ||
Sbjct 39889252 CCAGCGGACGCGCTGAGAAGGCGTACACGGA 39889222
>seq12
Length=72498081
Score = 136 bits (150), Expect = 5e-27
Identities = 195/267 (73%), Gaps = 6/267 (2%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| |||
Sbjct 64306953 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCATCGCGCCTGC 64306895
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || | || || |||||||| || |||||||||| || ||| | |||||||
Sbjct 64306894 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 64306835
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || |||||| ||| | | |||| |||||
Sbjct 64306834 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 64306776
Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646
|||||| ||||| ||||| ||| | | ||||| |||||||||| ||||| |||
Sbjct 64306775 GTGCAGCTGCTGTACCCGCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTCGTGGG 64306717
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673
|||||||||||||||||||||||
Sbjct 64306716 CAAGCTGGACGAGCGCTGCCGGCGCCG 64306690
>seq24
Length=47698779
Score = 116 bits (128), Expect = 5e-21
Identities = 186/263 (71%), Gaps = 3/263 (1%)
Strand=Plus/Plus
Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGG-GTCGCTCACGA 83216
|||||| || | || |||| |||||| |||| ||||||| ||| || | ||||||
Sbjct 16431663 CCAGGCAACACGGGTGTGGCAACCTGGAGGCCAGATGATGAGCTTGGGTGTTGGTCACGA 16431722
Query 83217 GCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGAT 83276
|| | ||| ||| || || | ||||| ||||| | | |||||| |||||| || |
Sbjct 16431723 GCACAGTGGTGTTGTCACTGGGGCCAGGCAGAGCCTCCCATGGGAAGGTGAAGAGAGGGT 16431782
Query 83277 GTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGT 83336
| || |||||| | |||||||||||||| | ||| |||| | | ||| |||||
Sbjct 16431783 GCACCTGTGCACCCTCCACCTCGCACTTCTCCAGAGGCACAAAGGTGGACTC-AAGCCCA 16431841
Query 83337 TC-CCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395
| | || | || || ||| |||||| | |||||| ||||| ||| ||||||||
Sbjct 16431842 CCGCTGGGTCAGATGTACTTGAGGGAATTGAGGATCTCTTCATTCCTGGCATTTTCCTGA 16431901
Query 83396 TGACCGAACTGGTTACACGGGAA 83418
|| | ||||||| | |||| |||
Sbjct 16431902 TGCCTGAACTGGCTCCACGAGAA 16431924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608771930650720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |