Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4 113 7e-20 seq7 105 1e-17 >seq4 Length=88276631 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||||||||| || | ||| | || | | | Sbjct 70238743 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACTATCACCCTTGAGGTCGAGCCCAGT 70238802 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||| || || || || || ||||| || Sbjct 70238803 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 70238862 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| || ||||| |||| ||| | ||||| | ||| || ||| Sbjct 70238863 CAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGCCGAACTCTGTCAGACTACAAT 70238922 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || ||||| ||||| | || | |||||||| || Sbjct 70238923 ATCCAGAAAGAGTCCACCTTGCACTTGGTGCTTCGCCTGCGAGGTGGCAT 70238972 >seq7 Length=80974532 Score = 105 bits (116), Expect = 1e-17 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| | ||| | ||||| || | ||||||||||| || | ||| | || | | | Sbjct 43111434 ATGCAGCTCTTTGTGAAGACCCTGATGGGCAAAACTATCACCCTTGAGGTCGAGCCCAGT 43111375 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || | | ||| | ||| ||||| ||||| ||||| || || |||||||| || Sbjct 43111374 GACACCACTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG 43111315 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| || ||||| |||| ||| | ||||| | ||| || ||| Sbjct 43111314 CAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGCCGAACTCTGTCAGACTACAAT 43111255 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||| ||||| || || ||||| ||||| | || | |||||||| || Sbjct 43111254 A-TCAGAAAGAGTCCACCTTGCACTTGGTGCTTCGCCTGCGAGGTGGCAT 43111206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755425139622400