Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4 140 3e-28 seq7 118 9e-22 seq26 116 3e-21 seq5 116 3e-21 seq39 91.5 1e-13 seq15 87.8 2e-12 >seq4 Length=88276631 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || ||||| || || ||| || ||| || Sbjct 70238952 CACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTTCGGCCATCTTC 70238893 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || || ||||||||||||||| Sbjct 70238892 TAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 70238833 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||| | |||||| || ||||||||| | ||| | ||||| Sbjct 70238832 GATTTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATAGTTTT 70238773 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 70238772 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743 >seq7 Length=80974532 Score = 118 bits (130), Expect = 9e-22 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| ||| | ||||| || || ||| || ||| || Sbjct 43111226 CACCAAGTGCAAGGTGGACTCTTTCTGA-TATTGTAGTCTGACAGAGTTCGGCCATCTTC 43111284 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || || | || ||||||||||| || || || |||||||| |||||| Sbjct 43111285 TAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCTTTGTCTTG 43111344 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||| |||||| || ||||||||| | ||| | ||||| Sbjct 43111345 GATTTTGGCTTTGACATTTTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATAGTTTT 43111404 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| | |||||| Sbjct 43111405 GCCCATCAGGGTCTTCACAAAGAGCTGCAT 43111434 >seq26 Length=38964690 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | || | || |||||||| | |||||||| || || |||||||| ||| Sbjct 5008495 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 5008436 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||| || |||||||| || || |||| | | |||||| || || || Sbjct 5008435 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 5008376 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || ||||| | |||| |||||| || ||| || Sbjct 5008375 GATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCACTGGGCTCCAC 5008316 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| | ||| | || || || |||| || || || || ||||||||| Sbjct 5008315 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 5008267 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || |||||| ||| || Sbjct 5007792 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007733 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 5007732 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007673 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 5007672 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007613 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || || ||||||||| Sbjct 5007612 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5007583 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || |||||| ||| || Sbjct 5008020 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007961 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 5007960 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007901 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 5007900 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007841 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || || ||||||||| Sbjct 5007840 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5007811 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || |||||| ||| || Sbjct 5008248 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5008189 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 5008188 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5008129 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 5008128 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5008069 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || || ||||||||| Sbjct 5008068 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5008039 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || |||||| ||| || Sbjct 5007564 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007505 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||||||||| Sbjct 5007504 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007445 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || || Sbjct 5007444 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007385 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 5007384 CCCGTCAAGGTCTTCACGAAGATCTGCAT 5007356 >seq5 Length=88915250 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || ||||||||||| | |||||| ||| || Sbjct 39533556 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 39533615 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || |||||||| || || Sbjct 39533616 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCTTTATCCTGG 39533675 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 39533676 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 39533735 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 39533736 CCGGTCAGGGTCTTCACGAAGATCTGCAT 39533764 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || ||||||||||| | |||||| ||| || Sbjct 39533784 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 39533843 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || |||||||| || || Sbjct 39533844 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCTTTATCCTGG 39533903 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 39533904 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 39533963 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 39533964 CCGGTCAGGGTCTTCACGAAGATCTGCAT 39533992 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118532 CAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAG 118591 || ||||| || |||| ||| || ||||||||||| | |||||| ||| || || Sbjct 47888014 CAGGTGGAGAGTTGACTTTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAG 47887955 Query 118592 CTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 ||| || || || ||||||| | |||||| || || || |||||||| || || || Sbjct 47887954 CTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGAT 47887895 Query 118652 TTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 || || || | ||||| |||||| || ||| ||||| | ||| | || ||||| Sbjct 47887894 CTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCC 47887835 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||||| || || |||||||| Sbjct 47887834 GGTCAGGGTTTTCACGAAGATCTGCAT 47887808 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || |||||||| || ||||||||||| | |||||| ||| || Sbjct 39534012 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 39534071 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || |||||||| || || Sbjct 39534072 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATGCCCTCTTTATCCTGG 39534131 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 39534132 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 39534191 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| || || ||| |||| Sbjct 39534192 CCGGTTAGGGTTTTCACGAAGATCGGCAT 39534220 >seq39 Length=123869142 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || || ||||| |||||||||||||| || Sbjct 84745796 ACCACCACGAAGTCTCAACACAAGATGAGGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 84745737 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || |||||| || || || || || | || || | ||||||||| ||||| Sbjct 84745736 CAAAGTACGGCCATCCTCCAGTTGCTTGCCCGCAAATATCAGTCTCTGCTGATCAGGAGG 84745677 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || ||| || || | | ||| | || |||| | ||| || Sbjct 84745676 GATTCCTTCCTTATCCAGAATCTTGGCCTTTTCATTTTCTATTGTATCCGAGGGCTCAAC 84745617 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || || || || || || ||||||||||| Sbjct 84745616 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAAATCTGCAT 84745569 >seq15 Length=64190966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGA-TCGGGAGGTATGCCCTCCTT 118642 ||||| ||||| ||||| | || ||| ||||||| || | ||| ||||||||||| Sbjct 16112453 TCCTCTGACTGTTGGCCAGCAAAAATCAGATGCTGCTGGGTCAGCAGG-ATGCCCTCCTT 16112395 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||||| ||| | | || ||||||| || ||||||||||| ||||| Sbjct 16112394 GTCTTGGATTTTGGCTTTGGCATTCTCAGTGGTGTCCCTGGGCTCGACCTCGAGGGTCAT 16112335 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || |||||||| || || || ||||| ||||||| Sbjct 16112334 GGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCA 16112300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813121077456