Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 3e-13 >seq12 Length=72498081 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| ||||| || ||||| || ||||||||| | || ||||| Sbjct 40850030 GCATTTTTTGGAGCACAGCTGAATTCCTTCATCCACGTGATTATGTACTCATACTATGGG 40849971 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | | || | ||| || | ||||| |||||||| ||||||||||| || | || || Sbjct 40849970 TTAACTGCATTTGGCCCGTGGATTCAG-AAGTATCTTTGGTGGAAACGATACTTAACCAT 40849912 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 40849911 GTTGCAGCTGGT 40849900 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| |||||||| | | || || || || || |||| |||||| |||||||| || Sbjct 40847431 GGTTCAGTTCCACGTGACCATTGGGCACACGGCGCTGTCTCTTTACACTGATTGCCCCTT 40847372 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | || |||| | || || |||||||| || ||| Sbjct 40847371 CCCAAAATGGATGCACTGGGCTCTCATCGCCTATGCAATCAGCTTCATATTTCTCTTTCT 40847312 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 40847311 TAACTTCTATGTTCGGACATACAA 40847288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923159087410720