Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4 118 7e-22 seq5 116 2e-21 seq7 93.3 3e-14 seq26 91.5 1e-13 >seq4 Length=88276631 Score = 118 bits (130), Expect = 7e-22 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| || || |||||||| || |||||||| ||| Sbjct 70238969 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAC 70238910 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | ||| ||||| || ||||| || ||||||||||| | |||| Sbjct 70238909 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 70238850 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||||||||| || ||| ||||| | || | || | || | | |||| Sbjct 70238849 -ATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGA 70238792 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | || | ||||| |||||||| || || || |||||||||||||||||| || Sbjct 70238791 CCTCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCT 70238739 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | ||| ||| ||||| ||||||||||||| ||| || | || Sbjct 13711442 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGGCAGGGTGCGCCCATC 13711383 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || || || | || ||||||||| | ||| | || ||| || || Sbjct 13711382 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTC-AGGGGGATGCCCTCTTTTTC 13711324 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| || | || | || | || | | || || |||| |||||||| Sbjct 13711323 TTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 13711264 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||||||||||||||| Sbjct 13711263 CTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13711231 >seq5 Length=88915250 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | ||| |||||||| |||||||| || || Sbjct 39533538 CCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 39533597 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||||||||| || ||||||| ||||||||| | |||| Sbjct 39533598 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 39533657 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| || || ||||| ||| | || | || | || | | || || Sbjct 39533658 -ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 39533716 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||| ||||||||||| Sbjct 39533717 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 39533764 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | ||| |||||||| |||||||| || || Sbjct 39533766 CCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 39533825 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||||||||| || ||||||| ||||||||| | |||| Sbjct 39533826 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 39533885 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| || || ||||| ||| | || | || | || | | || || Sbjct 39533886 -ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 39533944 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||| ||||||||||| Sbjct 39533945 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 39533992 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | ||| |||||||| |||||||| || || Sbjct 39533994 CCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 39534053 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || |||| |||||||||||| || ||||||| ||||||||| | |||| Sbjct 39534054 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 39534113 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| || || ||||| ||| | || | || | || | | || || Sbjct 39534114 -ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 39534172 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || |||||||| |||||| |||| Sbjct 39534173 CTCCAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCGGCAT 39534220 Score = 105 bits (116), Expect = 4e-18 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 34183 CAGGTGTAAAGT--ACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||||| | ||| ||||| ||||| |||||||| || || || ||| | || ||| Sbjct 47888014 CAGGTGGAGAGTTGACTTT--TTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 47887957 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 | |||||||||||| || ||||||| ||||||||| ||| | || ||| || || Sbjct 47887956 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 47887897 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 ||||| ||| | | | || | || | | || || |||| |||||||| ||| Sbjct 47887896 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 47887837 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || |||||||| ||||||||||| Sbjct 47887836 CCGGTCAGGGTTTTCACGAAGATCTGCAT 47887808 >seq7 Length=80974532 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| || || |||||||| || |||||||| ||| Sbjct 43111209 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTG-ATATTGTAGTCTGAC 43111267 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| ||||| || ||||| || ||||||||||| || Sbjct 43111268 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGG 43111327 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| ||||| | || | | | || | | ||||| Sbjct 43111328 ATGCCCTCTTTGTCTTGGAT-TTTGGCTTTGACATTTTCAGTGGTGTCACTGGGCTCGAC 43111386 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | ||||| |||||||| | || || |||||||||| ||||||| || Sbjct 43111387 CTCAAGGGTGATAGTTTTGCCCATCAGGGTCTTCACAAAGAGCTGCATCTCT 43111438 >seq26 Length=38964690 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | |||| || ||||| ||||||||||||||||| || | || Sbjct 5008480 CAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 5008421 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 5008420 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 5008361 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 5008360 CTGGATCTTCGCCTTAACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 5008301 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| ||||||||||| Sbjct 5008300 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008268 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| || | || Sbjct 5007567 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 5007508 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 5007507 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 5007448 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 5007447 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 5007388 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| ||||||||||| Sbjct 5007387 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007356 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| || | || Sbjct 5007795 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 5007736 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 5007735 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 5007676 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 5007675 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 5007616 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| ||||||||||| Sbjct 5007615 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007584 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| || | || Sbjct 5008023 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 5007964 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 5007963 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 5007904 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 5007903 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 5007844 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| ||||||||||| Sbjct 5007843 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007812 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||||||| || | || Sbjct 5008251 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 5008192 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 5008191 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 5008132 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 5008131 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 5008072 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| ||||||||||| Sbjct 5008071 TTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323059132446080