Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq30 1683 0.0 seq1 150 1e-31 >seq30 Length=40214260 Score = 1683 bits (1866), Expect = 0.0 Identities = 1407/1723 (82%), Gaps = 61/1723 (4%) Strand=Plus/Plus Query 107085 CCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAAG------- 107137 |||||||||| |||| ||||| || ||| |||| ||| ||||| ||||| Sbjct 24484533 CCCAGCATGAACAGCTAGTTTGTAGGGTCAAGTTATAGACCTCCATGGACAAGCTGAGAG 24484592 Query 107138 ------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTT 107191 | || |||||||| |||||| |||||| ||||||| |||||| || ||||| Sbjct 24484593 GAAGAGGTTCCTAGGCAGGTCTTGACCAAGGATACTTGTCTAGAGAAGAAATACCTCTTT 24484652 Query 107192 ACCATCACTCTGGAGTTGAACTTGATGTTCT--------------GGATTAGTTTGTAAT 107237 | |||||| |||||||||||||| ||||| || |||||||||||| Sbjct 24484653 GCTATCACTTTGGAGTTGAACTTGCTGTTCCTGTGAATACATTCAGGGTTAGTTTGTAAT 24484712 Query 107238 TAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCAC---CTTGCCTGTGCCCAAACT 107294 | ||||||||||||||||||||||| | | ||||| || ||| |||||||||||||| Sbjct 24484713 TGAAGGCATTTTGTTCTGTCCAAGGCTTCCATCCTCTACTTGCTTTCCTGTGCCCAAACT 24484772 Query 107295 CTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACAT 107354 | ||| | || ||| ||||||||||| | ||||||||||| ||| ||||| ||| Sbjct 24484773 CCACTGGTTTCTCATTCCATGAAGATGATTTGGTGGAAGAAGC-GCT--GCCGGCAGCAT 24484829 Query 107355 CATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTC 107414 | ||||||||||||||||||||| |||||||||| |||||| |||||||| |||| || Sbjct 24484830 TACCTGTGGGCCCTGGGCTGCTATGTGCTGCTGGCTGTTGTTGCTCTGAGATTTTCTCTT 24484889 Query 107415 AGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCAC 107474 || || |||||||| | || ||| |||||||||||||||| || || | || |||||| Sbjct 24484890 AGATTGAAATGTGACTTTGACTCCCTGGATCTGGAGTCCAGAGATTTTCGAAGCCAGCAC 24484949 Query 107475 TGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCT 107534 ||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||| Sbjct 24484950 TGTAGGGACATCTTGTACCAGTCGCTGAAGTTGCCAGCAAAGAGATCCATCAACTGTTCT 24485009 Query 107535 GGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTG 107594 |||||| ||||||||| | |||||||| |||| ||||| ||||||||||| || Sbjct 24485010 AGGATCATCCGAGGGGACTGGCAAGCAGTGTCGGAGGCTCTCCTGGACAACCTGGAGGTC 24485069 Query 107595 AAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAG 107654 ||||| |||||| |||| | || | ||| | ||||| ||||| ||| ||||||||||| Sbjct 24485070 AAGAAGAAGCGGAAGCCTTTAACAGACACGGACTACCTTAACATGACCCGAGACTGTGAG 24485129 Query 107655 CGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTC 107714 | ||| |||||| ||||||||||||||| |||||| ||||| ||||||||| |||||||| Sbjct 24485130 CACTTTAAGGCCAAAAGGAAGTTCATACGGTTCCCTCTGAGCAAAGAAGAGTTAGACTTC 24485189 Query 107715 CCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGA 107774 || ||||| ||||| |||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 24485190 CCAATTGCATACTCTATGGTGGTCCATGAGAAGATAGAAAACTTTGAAAGACTGCTGCGA 24485249 Query 107775 GCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACT 107834 || ||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||| Sbjct 24485250 GCTTTGTATGCTCCTCAGAACATATACTGTGTCCATGTGGATGAGAAATCCCCAGAAACT 24485309 Query 107835 TTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAG 107894 ||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||||||| Sbjct 24485310 TTCAAAGAGGCAGTCAAGGCGATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAG 24485369 Query 107895 TTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAA 107954 ||||| | |||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 24485370 TTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGTATGGAA 24485429 Query 107955 GACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTC 108014 |||||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 24485430 GACTTGCTCCGGAGCTCAGTGCCATGGAAATACTTACTAAATACATGTGGGACAGACTTT 24485489 Query 108015 CCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGT 108074 || |||||||||||||| ||||| ||||||||||||||||||||||| || ||||| ||| Sbjct 24485490 CCTATAAAGACCAATGCAGAGATAGTCCTGGCCCTCAAGATGTTGAATGGGAAGAATAGT 24485549 Query 108075 ATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTG 108134 |||||||| || |||| |||||| ||| || |||||||||||| | ||||||||| Sbjct 24485550 ATGGAGTCAGAAAAACCTACTGAGTACAAGAAGTCTCGCTGGAAATATCACTATGAGGTA 24485609 Query 108135 ACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATG 108194 ||||||||| ||||| ||||||||||||||||| ||||| ||||| ||| |||| || Sbjct 24485610 ACAGACACATTGTACATAACCAGCAAGATGAAGGATCCTCCTCCTGAGAATATACCTATA 24485669 Query 108195 TTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAAC 108254 |||||||||||||||||| ||||||| ||||||| ||| |||| |||||||||||| ||| Sbjct 24485670 TTCACAGGGAATGCCTATATTGTGGCTTCTCGAGACTTCGTCCGACATGTCTTAGAGAAC 24485729 Query 108255 CCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTC 108314 || || || | ||||||| |||||||||| || ||||||||||||||||| || || || Sbjct 24485730 CCCAAGTCTCGAAGACTGATTGAATGGGTAAAGGACACCTATAGCCCCGATGAGCATCTA 24485789 Query 108315 TGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTAT 108374 ||||| |||||||||||||| || |||||||| || ||| ||||| ||| ||||||| | Sbjct 24485790 TGGGCTACCCTTCAGCGTGCACCATGGATGCCCGGTTCTATTCCTTACCATCCCAAGTTT 24485849 Query 108375 CACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGAT 108434 |||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||||| Sbjct 24485850 CACATCTCAGACATGATAGCCATTGCCAGGCTGGTCAAGTGGCAAAGCCATGAGGGAGAC 24485909 Query 108435 GTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATT 108494 |||| |||||||| |||||||| || |||||||||||||| | | || | ||||| ||| Sbjct 24485910 ATCAGTATGGGGGCACCTTATGCCCCTTGCTCTGGAATCCACCAGCGGTCTATCTGTATT 24485969 Query 108495 TACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTT 108554 || ||| ||||||||| |||||||||| || ||||||||||| ||||| ||||||||| Sbjct 24485970 TATGGGATTGGGGACCTGCACTGGATTCTTCAAAACCATCACCTGTTGGCCAACAAGTTT 24486029 Query 108555 GACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCC 108614 ||||| | ||||||||| || || || |||||||||||||||||| ||||| |||||||| Sbjct 24486030 GACCCAAAGGTGGATGACAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGGCC 24486089 Query 108615 ATCTATGGGACTGAACTTTGAG----------------CTGC--ACTGTGGGCCAGGGAC 108656 ||||||||||||||||| |||| ||| ||||||| |||| || Sbjct 24486090 ATCTATGGGACTGAACTCTGAGATATCCCATCATAATATTGCTACCTGTGGGACAGGAAC 24486149 Query 108657 -TGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGA 108715 | ||| |||||||||||| || |||| || || |||||||| ||||| | | Sbjct 24486150 ATATGCAGACATGCCCAGGGGGTGCTGGGAC--AGTAGGGTGGGG---TGGGGCTCTAAA 24486204 Query 108716 ATCCATGGCATCCCCCAGGGTCAGAGGGCTGCTTTGATGGGGT 108758 ||| ||| |||||| | ||||| |||||||| || ||||| Sbjct 24486205 ATCTTTGGGATCCCCAA--GTCAGGGGGCTGCTATG--GGGGT 24486243 >seq1 Length=122678785 Score = 150 bits (166), Expect = 1e-31 Identities = 577/895 (64%), Gaps = 47/895 (5%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||||||||||| ||| || ||||| || || || || || || ||| | || Sbjct 81990537 CCCCTTAGTAAAGAAGAAGCAGAATTTCCCATAGCATATTCTATAGTAGTTCATCACAAA 81990478 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| |||| ||| | ||| | || |||||||| | ||||| | Sbjct 81990477 ATTGAGATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTACTGCATT 81990418 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || ||| || | ||| | || || | |||| |||||| Sbjct 81990417 CACGTGGACAAAAAATCCGAGGATTCCTTCTTGGCTGCCGTGCTTGGCATTGCGTCCTGC 81990358 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| |||||||| || | | ||||| |||||||| ||| || Sbjct 81990357 TTCAGTAACATCTTCGTGGCCAGTCAGCTAGAGAGTGTGGTATATGCCTCATGGAGTCGA 81990298 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC-TCAGTGCCA--TGGAAG 107984 || || |||||||| ||||| ||| | ||| ||||| || | ||||| |||||| Sbjct 81990297 GTTCAGGCTGACCTCAACTGCATGCAGGAC---CTCCATAGGATGAGTGCAGACTGGAAG 81990241 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||||| | ||| || || | || || || || || ||||| || || |||| | Sbjct 81990240 TACTTGATAAATCTTTGTGGCATGGATTTTCCTATCAAAACCAACTTGGAAATTGTCCGG 81990181 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCC 108101 ||||| | | | |||| | |||| | || ||||| | || || | | Sbjct 81990180 AAGCTCAAATCGCTAATGGGTGAAAACAACCTAGAAACTGAGAGAATGCCATCCAA---C 81990124 Query 108102 aaaaaaaaTCGCTGGAAA--------TACCGCT----ATG---AGGTGACAGACACACTG 108146 |||||| | | |||||| ||| | | ||| || |||| ||||| | Sbjct 81990123 AAAAAAGAAAGGTGGAAAAAGCATTTTACAGTTGTTAATGGAAAGCTGACCAACACAGGG 81990064 Query 108147 TACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAAT 108206 || ||| ||| | || || | ||| | ||| | || |||| | | Sbjct 81990063 ------ACTGACAAAATGCAT---CCACCTCTTGAAAC---ACCTCTATTTTCAGGCAGT 81990016 Query 108207 GCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAA 108266 || |||||||||| | | | | ||| || |||| || | || ||| |||| Sbjct 81990015 GCTTATTTTGTGGTCAGTAGGAAGTATGTAGAATATGTGCTAAAGAATGAAAAAATCCAA 81989956 Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326 | | | || |||| |||||||| || ||||| || || ||||||||||||| || Sbjct 81989955 AAGTTTATGGAGTGGGCAAAAGACACATACAGCCCTGATGAGTACCTCTGGGCCACTATT 81989896 Query 108327 CAGCGTGCTCCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTC 108382 ||| | | ||| || | | || ||||| | |||| ||||| |||||| |||| || Sbjct 81989895 CAGAG-GATCCCTGAAGTCCCAGGCTCGCTGTCCTTAAGCCAG---AAGTATGACATGTC 81989840 Query 108383 AGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCAT 108442 |||||| ||| ||||| ||| | ||||| ||||||||| || || |||||| | Sbjct 81989839 TGACATGCATGCAATCGCAAGGTTTGTCAAATGGCAGTACTTTGAAGGTGATGTCTCTAA 81989780 Query 108443 GGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGC 108502 ||| || || || |||| ||| ||| ||||| | | | | || ||| ||| || Sbjct 81989779 GGGTGCCCCCTACCCACCGTGCAGTGGGGTCCATGTGCGTTCTGTGTGTGTTTTCGGAGC 81989720 Query 108503 CGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || ||| || ||||||| || | || || ||| | || || |||||||||||| Sbjct 81989719 AGGTGACTTGAACTGGATGCTACGCAAGCACCACTTGTTTGCCAACAAGTTTGAC 81989665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348254928889032