Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq26 145 6e-30 seq4 113 4e-20 seq1 113 4e-20 seq5 87.8 1e-12 >seq26 Length=38964690 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| || ||||||||| |||||||||||| | Sbjct 5008494 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 5008435 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| ||||| || ||||||| ||| ||||| || || Sbjct 5008434 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5008375 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || |||||| | | | | |||| | ||||||| Sbjct 5008374 ATGCCCTCCTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCACTGGGCTCCACC 5008315 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||| || ||||| ||||||| |||||||| ||||| |||||| Sbjct 5008314 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 5008267 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 5007792 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007733 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| ||||| || || | |||||||||||| Sbjct 5007732 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007673 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 5007672 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007613 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 5007612 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5007583 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 5008020 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007961 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| ||||| || || | |||||||||||| Sbjct 5007960 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007901 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 5007900 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007841 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 5007840 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5007811 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 5008248 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5008189 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| ||||| || || | |||||||||||| Sbjct 5008188 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5008129 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 5008128 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5008069 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||| |||||||| ||||| |||||| Sbjct 5008068 CCCGTCAAGGTCTTCACGAAGATCTGCATG 5008039 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 5007564 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007505 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| ||||| || || | |||||||||||| Sbjct 5007504 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007445 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 5007444 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5007385 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| |||||||| ||||| ||||| Sbjct 5007384 CCCGTCAAGGTCTTCACGAAGATCTGCAT 5007356 >seq4 Length=88276631 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| || | || ||| Sbjct 13711210 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCACCCATCTTCC 13711151 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| | ||| || ||||||| ||| ||||| || || | || ||||||||| Sbjct 13711150 AGCTGTTTGCTGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 13711091 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| ||||||||||| || || ||||| Sbjct 13711090 ATCTTTGCCTTGACATTCTCGATGGTGTCATTGGGCTCCACCTCCAGAGTGATGGTCTTA 13711031 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 13711030 CCAGTCAAGGTCTTCACGAAGATCTGCATG 13711001 Score = 113 bits (124), Expect = 4e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| ||| |||||||| |||||||||||| | Sbjct 13711456 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGGC 13711397 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| ||||| || ||||||| ||| ||||| || || Sbjct 13711396 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG-GGG 13711338 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || || || || || || | | | | |||| | ||||||| Sbjct 13711337 ATGCCCTCTTTTTCTTGGATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACC 13711278 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| |||||||||||||| ||||| Sbjct 13711277 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13711231 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||||||||| ||| ||| ||||| || |||||||| Sbjct 70238970 GCCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGA 70238911 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| || | || || || ||||| || || || |||| ||||| ||||| || || Sbjct 70238910 CAGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGG 70238851 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||||| || || | | | |||| | ||| || Sbjct 70238850 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGAC 70238791 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | ||| || || ||||||||||| |||||||||||||| ||||| Sbjct 70238790 CTCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743 >seq1 Length=122678785 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| ||||||||| |||||||||||| ||| || | || || Sbjct 14875189 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCATCTTCT 14875248 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || ||||||| ||| ||||| || || | ||||| || || Sbjct 14875249 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGG 14875308 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | |||| | ||||||||||| ||| || ||||| Sbjct 14875309 ATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 14875368 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||| ||||| |||||| Sbjct 14875369 CCAGTCAAGGTCTTCACGAAGATCTGCATG 14875398 >seq5 Length=88915250 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| ||| || || ||| ||||| |||||||| || Sbjct 39533537 GCCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGA 39533596 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| ||||| || || Sbjct 39533597 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGG 39533656 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| || ||| || || ||| || | | | |||| | |||||| Sbjct 39533657 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 39533716 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 39533717 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 39533764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| ||| || || ||| ||||| |||||||| || Sbjct 39533766 CCACCCCTCAGGCGCAGGACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAA 39533825 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || || | || ||| ||||| || || Sbjct 39533826 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGCGGG 39533885 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || ||| || || ||| || | | | |||| | ||||||| Sbjct 39533886 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 39533945 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 39533946 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 39533992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395059464648628