Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq4 98.7 8e-16
seq26 87.8 1e-12
>seq4
Length=88276631
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| |||| ||| | || || ||||| || || |||||||| | |
Sbjct 70238969 CCACCTCGCAGGCGAAGCACCAAGTGCAAGGTGGACTCTTTCTGGATATTGTAGTCTGAC 70238910
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | |||||| | |||||||||||| | || || | || || || ||
Sbjct 70238909 AGAGTTCGGCCATCTTCTAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGG 70238850
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| ||| ||||| || |||| | || ||||| | | ||| ||||||| |||||||
Sbjct 70238849 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTTTCAATGGTGTCACTGGGCTCGAC 70238791
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| |||||| ||||||| |||| || || ||||| || |||||
Sbjct 70238790 CTCAAGGGTGATAGTTTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 70238743
>seq26
Length=38964690
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||| || | ||| |||| ||| || || || || || || ||||||||||||| |
Sbjct 5007582 CCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 5007523
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| |||||||| ||| |||| | || || || || |||
Sbjct 5007522 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5007463
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || || | |||||| | | | ||||||| ||||||
Sbjct 5007462 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 5007403
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | ||||||| | || || ||||| || || || || || ||||||
Sbjct 5007402 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATT 5007355
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||| || | ||| |||| ||| || || || || || || ||||||||||||| |
Sbjct 5007810 CCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 5007751
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| |||||||| ||| |||| | || || || || |||
Sbjct 5007750 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5007691
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || || | |||||| | | | ||||||| ||||||
Sbjct 5007690 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 5007631
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| | || || ||||| || || || || || |||||
Sbjct 5007630 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007584
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||| || | ||| |||| ||| || || || || || || ||||||||||||| |
Sbjct 5008038 CCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 5007979
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| |||||||| ||| |||| | || || || || |||
Sbjct 5007978 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5007919
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || || | |||||| | | | ||||||| ||||||
Sbjct 5007918 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 5007859
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| | || || ||||| || || || || || |||||
Sbjct 5007858 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5007812
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| |||| || | ||| |||| ||| || || || || || || ||||||||||||| |
Sbjct 5008266 CCCCCCCTGAGGCGAAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 5008207
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | |||||||| |||||||| ||| |||| | || || || || |||
Sbjct 5008206 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 5008147
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||| ||||| || || | |||||| | | | ||||||| ||||||
Sbjct 5008146 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 5008087
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| | || || ||||| || || || || || |||||
Sbjct 5008086 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 5008040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379328891202660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |