Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq21 129 5e-25
seq4 100 3e-16
seq17 93.3 4e-14
seq39 84.2 2e-11
>seq21
Length=50858623
Score = 129 bits (142), Expect = 5e-25
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || |||||||| ||||| || || || ||||| || || |||||
Sbjct 26618059 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 26618000
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
||||| || |||||||||||| ||||| || ||||| ||||||||||||||||| ||
Sbjct 26617999 CCCAAGTTCTGCTGGTTGCTTTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 26617940
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 26617939 CCTGTCTCTGTCTGAGACTCAATGATGGC 26617911
>seq4
Length=88276631
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| |||||||| |||||| | || || || ||
Sbjct 70238743 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAAACTATCACCCTTGAGGTCGAGCCCAGT 70238802
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| |||||| | ||| |||||||| ||| | ||||| ||||||
Sbjct 70238803 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 70238862
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || || ||||||||| | |||||
Sbjct 70238863 CAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGA 70238897
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| || || || ||||| | || || || ||
Sbjct 13711001 CATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGAGCCCAA 13711060
Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
|||| |||| | ||||| || ||| | ||||||||||||| | || || ||||
Sbjct 13711061 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCCCCTGACC 13711119
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369
||||| | | || || || |||||||| ||||||| | || || || || ||
Sbjct 13711120 AGCAGAGGTTGATCTTTGCCAGCAAACAGCTGGAAGA-TGGGTGCACCCTGTCTGACTAC 13711178
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || || || || ||||| || ||||| ||| | || ||||| ||
Sbjct 13711179 AACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGG 13711228
>seq17
Length=64289059
Score = 93.3 bits (102), Expect = 4e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| || || ||||| ||||| || ||||||||||| |||||| ||||||| ||| |
Sbjct 7110574 GCCTTTGCTGCCGTGGAAGGAATCTTCTTTTCGGGTTCTTTTGCGTCAATATTCTGGCTC 7110633
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081
|||||||| ||||||||||| ||||| |||||| ||| ||
Sbjct 7110634 AAGAAACGGGGCCTGATGCCTGGCCTCACGTTTTCCAATGA 7110674
>seq39
Length=123869142
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || || ||||| |||| ||||| ||
Sbjct 84745566 AAGATGCAGATTTTCGTTAAGACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAGCCC 84745625
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| | || | || ||| |||||||| | || || ||
Sbjct 84745626 TCGGATACAATAGAAAATGAAAAGGCCAAGATTCTGGATAAGGAAGGAATCCCTCCTGAT 84745685
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | || ||||| || ||||| || |||| || ||| || || ||
Sbjct 84745686 CAGCAGAGACTGATATTTGCGGGCAAGCAACTGGAGGATGGCCGTACTTTGTCTGACTAC 84745745
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || |||| |||||| || | |||||
Sbjct 84745746 AACATTCAAAAGGAGTCCACTCCTCATCTTGTGTTGAGACT 84745786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445748190442560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |