Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq21 122 1e-22
seq17 120 4e-22
seq10 102 1e-16
seq13 89.7 6e-13
>seq21
Length=50858623
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| || || ||||| ||||| || || || |||||||| ||||| |
Sbjct 26626588 ACCTGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 26626529
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 26626528 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 26626469
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 26626468 CTGTTTCTTACACCATA 26626452
Score = 116 bits (128), Expect = 5e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678
|| ||| |||| || |||||||| || | || || || || | ||| || ||||| ||
Sbjct 26621657 GAACCTTCATAGGTTTCATATGGCCCATGCTCCTTGGCCAGGTCACAGCTGGCCTCCAAG 26621598
Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738
|| || |||||||||||||||||||| | |||||| || || ||||| || || |||
Sbjct 26621597 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 26621538
Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798
|| ||||| | | |||||||| || || || | ||||| || ||||| || || ||
Sbjct 26621537 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 26621478
Query 62799 CTATGTCTCTTATTAGA 62815
| ||| | ||||| ||
Sbjct 26621477 CGATGGCGTTTATTTGA 26621461
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| || ||||| |||||||||||||| | || || || || | |
Sbjct 26616519 CTCCACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACG 26616460
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
||||| || ||||| || ||||| || | ||| || ||| | | ||| || |||||||
Sbjct 26616459 CTGTTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 26616400
Query 63383 CGGTTCCAAGTATATGGC 63400
||||||| ||| || ||
Sbjct 26616399 AGGTTCCAGGTAAATAGC 26616382
>seq17
Length=64289059
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || |
Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || || ||||||||||||||||| || ||||||||||
Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575
Query 33724 C 33724
|
Sbjct 7110574 C 7110574
Score = 93.3 bits (102), Expect = 5e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||||||| |||||| || || | ||||||||||| || || || |||||||| |||||
Sbjct 7108469 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAGTGGATGTTTTCCATGGC 7108410
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| || || || |||||||| | || || |||||||| ||||||
Sbjct 7108409 AATTTGGAAGCCATAGAAACAGCGGGCTTCCGTAATCTGAACTTCT 7108364
>seq10
Length=69331447
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| ||| | | ||||| || || |||||||||| || |||
Sbjct 8651924 GTTACTTTCTATGATGTCTATATTATCCTGCAAGCGTTTATACTGACTACTGCTGTATTT 8651865
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || |||||||||||| |||||||||||||| ||| ||| | ||||
Sbjct 8651864 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 8651806
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229
||||| ||||||| ||||| ||||||||||||| ||||| ||||| || ||||| ||||
Sbjct 8670849 CGTGCGCCTCCATAGAGGAGGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGC 8670790
Query 188230 ACATACGAATGG 188241
|||| |||||||
Sbjct 8670789 ACATCCGAATGG 8670778
>seq13
Length=63241923
Score = 89.7 bits (98), Expect = 6e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || |||| || ||||||
Sbjct 3826431 AAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 3826490
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074
|| || || |||| | | || || ||||| | | || ||| || ||||
Sbjct 3826491 TACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 3826539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629791871951040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |