Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq21 122 1e-22 seq17 120 4e-22 seq10 102 1e-16 seq13 89.7 6e-13 >seq21 Length=50858623 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| || || ||||| ||||| || || || |||||||| ||||| | Sbjct 26626588 ACCTGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 26626529 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 26626528 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 26626469 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 26626468 CTGTTTCTTACACCATA 26626452 Score = 116 bits (128), Expect = 5e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 || ||| |||| || |||||||| || | || || || || | ||| || ||||| || Sbjct 26621657 GAACCTTCATAGGTTTCATATGGCCCATGCTCCTTGGCCAGGTCACAGCTGGCCTCCAAG 26621598 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || || |||||||||||||||||||| | |||||| || || ||||| || || ||| Sbjct 26621597 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 26621538 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||||| | | |||||||| || || || | ||||| || ||||| || || || Sbjct 26621537 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 26621478 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| | ||||| || Sbjct 26621477 CGATGGCGTTTATTTGA 26621461 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| || ||||| |||||||||||||| | || || || || | | Sbjct 26616519 CTCCACTCGTTTCATGAACAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTGGCACG 26616460 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || ||||| || ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 26616459 CTGTTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 26616400 Query 63383 CGGTTCCAAGTATATGGC 63400 ||||||| ||| || || Sbjct 26616399 AGGTTCCAGGTAAATAGC 26616382 >seq17 Length=64289059 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || | Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| || |||||||||| Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575 Query 33724 C 33724 | Sbjct 7110574 C 7110574 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| |||||| || || | ||||||||||| || || || |||||||| ||||| Sbjct 7108469 ATCTTTAATATAAGTGTCAATGAGGAGACTATACATCTCAGAGTGGATGTTTTCCATGGC 7108410 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || |||||||| |||||| Sbjct 7108409 AATTTGGAAGCCATAGAAACAGCGGGCTTCCGTAATCTGAACTTCT 7108364 >seq10 Length=69331447 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| | | ||||| || || |||||||||| || ||| Sbjct 8651924 GTTACTTTCTATGATGTCTATATTATCCTGCAAGCGTTTATACTGACTACTGCTGTATTT 8651865 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 8651864 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 8651806 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229 ||||| ||||||| ||||| ||||||||||||| ||||| ||||| || ||||| |||| Sbjct 8670849 CGTGCGCCTCCATAGAGGAGGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGTGTGC 8670790 Query 188230 ACATACGAATGG 188241 |||| ||||||| Sbjct 8670789 ACATCCGAATGG 8670778 >seq13 Length=63241923 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || |||| || |||||| Sbjct 3826431 AAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATATGTGAGAGATAAAA 3826490 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || |||| | | || || ||||| | | || ||| || |||| Sbjct 3826491 TACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 3826539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629791871951040