Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq13 120 3e-22
seq21 114 1e-20
seq39 93.3 4e-14
>seq13
Length=63241923
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| |
Sbjct 3818023 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 3818082
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || ||||| ||||| || || || ||||| ||||| |
Sbjct 3818083 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 3818142
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 3818143 CCACGACTCTTTCCCC 3818158
>seq21
Length=50858623
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| ||||| ||||||| ||||| || ||||| ||||| |||||||||
Sbjct 26626588 ACCTGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 26626529
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || |||||||||||||| || || || |
Sbjct 26626528 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 26626469
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 26626468 CTGTTTCTTACACCAT 26626453
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || ||||| | || ||||| ||||| | ||||| || || || | | ||
Sbjct 26610076 GTACCAGCATTAAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 26610017
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|||||||| || || |||| ||||| | ||||||| || | ||| || ||||| | |
Sbjct 26610016 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACTCTCATCAAC 26609957
Query 38533 ATATGTTGTGGTCTTTCT 38550
||||||||||||||||||
Sbjct 26609956 ATATGTTGTGGTCTTTCT 26609939
>seq39
Length=123869142
Score = 93.3 bits (102), Expect = 4e-14
Identities = 261/396 (66%), Gaps = 11/396 (3%)
Strand=Plus/Minus
Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT 11877
|| || ||| |||||||| |||| || |||||| || || || || || | | ||
Sbjct 94450237 GGTCCGATCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTGAAGAGAA--AT 94450180
Query 11878 TT--TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935
| ||||| || |||| | | | | || | || | | |||||||| || || |
Sbjct 94450179 TCCCTTTCTTTAGAATCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTG 94450120
Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|| ||||||| | ||||| |||||||||||||| | || ||| | ||| || ||
Sbjct 94450119 ATGTTTTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCT 94450060
Query 11996 ACATAAAATCTTTCCGCTAAATTCT-CATTTACAATACCATCACTAGATGCAAAAAATGC 12054
||| | ||| | || || | | ||||| || |||||||| | |||| || ||
Sbjct 94450059 TGGATAAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGC 94450000
Query 12055 TAGTATATGTTTTATAAAGTATTTTTCGTC---TTTAGTTAATTTATCCCAATCATCTAA 12111
| ||||| |||||| ||| | || || ||| | || ||||||| | |
Sbjct 94449999 CAAAATATGGGGTATAAAATATCTCTCCTCAGGTTTCGAGGAT---TCCCAATGCTGAAT 94449943
Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171
|| || || | ||| || |||||| | |||||||| ||| | | || ||||||||
Sbjct 94449942 GTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACAT 94449883
Query 12172 TTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207
| ||| ||| |||| |||| ||| ||| ||| ||
Sbjct 94449882 CTGCCAAATACCATGGTACTCGATAAGGAGAATGAC 94449847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468505660761920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |