Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13 120 3e-22 seq21 114 1e-20 seq39 93.3 4e-14 >seq13 Length=63241923 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 3818023 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 3818082 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || ||||| ||||| || || || ||||| ||||| | Sbjct 3818083 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 3818142 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 3818143 CCACGACTCTTTCCCC 3818158 >seq21 Length=50858623 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| ||||| ||||||| ||||| || ||||| ||||| ||||||||| Sbjct 26626588 ACCTGAAATTCTCCTGATAAGACTCTTCGAGTATAGATGTTGCTGGTATAAGGTTCAATG 26626529 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 26626528 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 26626469 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 26626468 CTGTTTCTTACACCAT 26626453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || ||||| | || ||||| ||||| | ||||| || || || | | || Sbjct 26610076 GTACCAGCATTAAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 26610017 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | ||||||| || | ||| || ||||| | | Sbjct 26610016 TATGTTTCAATAGCAGCATCAATATCTTCTTCGTGAATCCCCACAGACACTCTCATCAAC 26609957 Query 38533 ATATGTTGTGGTCTTTCT 38550 |||||||||||||||||| Sbjct 26609956 ATATGTTGTGGTCTTTCT 26609939 >seq39 Length=123869142 Score = 93.3 bits (102), Expect = 4e-14 Identities = 261/396 (66%), Gaps = 11/396 (3%) Strand=Plus/Minus Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT 11877 || || ||| |||||||| |||| || |||||| || || || || || | | || Sbjct 94450237 GGTCCGATCTGCTTTCTTCTTTATACAAGACATTGTCTCAATGGCATTGAAGAGAA--AT 94450180 Query 11878 TT--TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935 | ||||| || |||| | | | | || | || | | |||||||| || || | Sbjct 94450179 TCCCTTTCTTTAGAATCTTTAATAAAAGTGACAATGAGGAGGCTATACATCTCAGAGTTG 94450120 Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 || ||||||| | ||||| |||||||||||||| | || ||| | ||| || || Sbjct 94450119 ATGTTTTCCACGACAATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCT 94450060 Query 11996 ACATAAAATCTTTCCGCTAAATTCT-CATTTACAATACCATCACTAGATGCAAAAAATGC 12054 ||| | ||| | || || | | ||||| || |||||||| | |||| || || Sbjct 94450059 TGGATAAACCACTCCACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGC 94450000 Query 12055 TAGTATATGTTTTATAAAGTATTTTTCGTC---TTTAGTTAATTTATCCCAATCATCTAA 12111 | ||||| |||||| ||| | || || ||| | || ||||||| | | Sbjct 94449999 CAAAATATGGGGTATAAAATATCTCTCCTCAGGTTTCGAGGAT---TCCCAATGCTGAAT 94449943 Query 12112 ATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACAT 12171 || || || | ||| || |||||| | |||||||| ||| | | || |||||||| Sbjct 94449942 GTCCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACAT 94449883 Query 12172 TTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207 | ||| ||| |||| |||| ||| ||| ||| || Sbjct 94449882 CTGCCAAATACCATGGTACTCGATAAGGAGAATGAC 94449847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468505660761920