Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq19 185 7e-42 seq7 134 1e-26 seq1 93.3 4e-14 seq17 87.8 2e-12 seq5 87.8 2e-12 >seq19 Length=53741614 Score = 185 bits (204), Expect = 7e-42 Identities = 258/359 (72%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 21281 GTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCG 21340 ||| || ||||||||||| |||||||| || || || | || || | ||| || || Sbjct 21178175 GTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAATTGGGCCTAAATCCCCTTCTTC 21178116 Query 21341 GCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 |||| |||| ||| | || | |||||||| | || ||||| | || ||||| |||| Sbjct 21178115 TCGGTTGGCGAATCCCAG-GCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATTT 21178057 Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACT 21459 | || || | | |||||||| | | || ||||| ||| |||||||||||||||||| Sbjct 21178056 TCACTCCCCTGGAAGACAGTTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAACT 21177997 Query 21460 CCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGA 21519 |||||| || ||| ||||||| || | |||||| || | ||||||||| || || || | Sbjct 21177996 CCTCCAAAACACCCTTCCAAAATACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCA 21177937 Query 21520 GGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCC 21579 || | || || ||||| | |||||||| ||| |||||| |||||| | ||| | | Sbjct 21177936 GGCTGTAGCGCGCCTGCATGCCGAACACCGACAGCGTGCCCGTGCCCGTGCGGTCGTGCT 21177877 Query 21580 TCTGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTCGCCGTGG 21638 || | | ||| | | || |||| ||| ||| |||||||||||| |||||| Sbjct 21177876 TCCGGGCCCCGCAGCTCAGGATGTGCTCCACCTGCCCCAGGTACTGCAGCTCCCCGTGG 21177818 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 ||||| ||||| || || || | || ||||| || ||||| || || ||||| | Sbjct 16731480 TTAAA-GCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGG 16731422 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || ||||||||||||| | | ||| || ||||| ||||| || || Sbjct 16731421 TCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATAGAG 16731362 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 |||||||| | | |||||||| |||| ||||| || |||| | || || | | | Sbjct 16731361 AACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCCACGGAGGAGTTCGTG 16731302 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || ||| || | | ||| || || || ||||| |||| Sbjct 16731301 GTCATTCTTTGGAAACACTTGAATTCATTCCTGAGCGGGGGCCAGGGCA 16731253 >seq7 Length=80974532 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 67495361 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 67495302 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || || |||||||| | ||||||||||| ||||||||||||||||| || Sbjct 67495301 GCACGCCCAGCCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGACAGCTCACCGTTCA 67495242 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 67495241 CCACATAGAACTGGCAGAGGGCATGGCACGGAGGTAGGGCCATC 67495198 >seq1 Length=122678785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/162 (74%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 ||||| ||||| || || || | || ||||| || | ||| || || ||||| | | || Sbjct 42969656 TTAAA-GCATCATCCAGACTTTTGGCAAGAAAATGAGTTCCTTGTGGAGGTTC-CTTGAT 42969713 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||||| | || ||||||||||||| | | ||| || ||||| ||||| || || Sbjct 42969714 -CTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATAGAG 42969772 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124 |||||||| | | |||||||| |||| ||||| || |||| Sbjct 42969773 AACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 42969814 >seq17 Length=64289059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 |||||||| || ||||| || || || | ||| || ||||||| || || || Sbjct 59034258 TCAACGTGATTTAGGTAAATATGTGCATCTCTCAAAGTACCTACAAAGTTACCTGGCTTC 59034199 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGC----GTAGCTGGCGATGTTAAA 21046 ||||| |||| ||| ||| ||| || | || | ||| |||||||| ||||| | Sbjct 59034198 AGGCCTGTGATGTGTGCGGTCATGTAGGCGAGCAAGGCCTGTGTAGCTGGTAATGTTGAG 59034139 Query 21047 CGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 || || || ||||| ||||| ||||| ||||||| ||||||||||||||| Sbjct 59034138 GGGCACACCCAGGCCTATGTCTTGTGACCTGTGGTACAACTGGCAGGACAGCTC 59034085 >seq5 Length=88915250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 ||||| ||||| || || || | || ||||| || ||||| || || ||||| | Sbjct 42955825 TTAAA-GCATCATCCAGATTT-TGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGG 42955882 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || ||||||||||||| | | | | || ||||| ||||| || || Sbjct 42955883 TCTCTGCTGAGAACTATATTAATTCTGTCCTTTAAAAGTCGATTCTTCTCAGGAATAGAG 42955942 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 |||||||| | |||||||| ||| ||||| || |||| | || || | | | Sbjct 42955943 AACCATGTCTTCCAACCCATAATCGCCAAATTCTGTTTACCTTCCACAGAGGAGTTCGTG 42956002 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAG 3177 |||||| | || |||||| | | ||| || || || Sbjct 42956003 GTCATTCTTTGGAAATACTTGAATTCATTCCTGAG 42956037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427758962216640