Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq17 111 2e-19 seq13 82.4 7e-11 >seq17 Length=64289059 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| || || |||||||| | Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575 Query 14014 CTATTAATCGTTCTCC 14029 | | | |||||||| Sbjct 7110574 CCACAACCCGTTCTCC 7110559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 7112073 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 7112014 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||| |||||||||||| Sbjct 7112013 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 7111978 >seq13 Length=63241923 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582 |||||||| |||| || | || |||||||| || || | | ||||| | | Sbjct 3799250 TAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCT-GCCATAACCGCAAAACG 3799308 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| || ||||| ||| |||||||| |||||||| ||||| | || || ||||| Sbjct 3799309 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTC 3799368 Query 13643 CATAAAATCAAATGGATTT 13661 |||||||||||| |||||| Sbjct 3799369 CATAAAATCAAAGGGATTT 3799387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479708403111200