Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq17 111 2e-19
seq13 82.4 7e-11
>seq17
Length=64289059
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| |
Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||||| ||||| || || |||||||| ||||| || || |||||||| |
Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575
Query 14014 CTATTAATCGTTCTCC 14029
| | | ||||||||
Sbjct 7110574 CCACAACCCGTTCTCC 7110559
Score = 96.9 bits (106), Expect = 3e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || |||
Sbjct 7112073 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 7112014
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|||||||| ||||| |||||||| ||||||||||||
Sbjct 7112013 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 7111978
>seq13
Length=63241923
Score = 82.4 bits (90), Expect = 7e-11
Identities = 103/139 (74%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582
|||||||| |||| || | || |||||||| || || | | ||||| | |
Sbjct 3799250 TAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCT-GCCATAACCGCAAAACG 3799308
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
|||||| || ||||| ||| |||||||| |||||||| ||||| | || || |||||
Sbjct 3799309 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTC 3799368
Query 13643 CATAAAATCAAATGGATTT 13661
|||||||||||| ||||||
Sbjct 3799369 CATAAAATCAAAGGGATTT 3799387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479708403111200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |