Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq17 105 6e-18 >seq17 Length=64289059 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | || ||||||| || ||||| | Sbjct 7110694 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCT 7110635 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| || || |||||||| | Sbjct 7110634 TGAGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGG 7110575 Query 13802 CTATTAGTCGTTCTCC 13817 | | | |||||||| Sbjct 7110574 CCACAACCCGTTCTCC 7110559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 7112073 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 7112014 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| |||||||| || ||||||||| Sbjct 7112013 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 7111978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478569249647520